Query= MSMg01no477_b19.b1 MSMg01no477_b19.b1 CHROMAT_FILE:
MSMg01no477_b19.b1 PHD_FILE: MSMg01no477_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:27 2005
(695 letters)
>mm_chr4_21653735_21654837
Length = 1103
Score = 1216 bits (629), Expect = 0.0
Identities = 680/701 (97%), Gaps = 10/701 (1%)
Strand = Plus / Plus
Query: 3 cggaattcttgactaattttcaggtgtgcccaatcatttagagacattttttttaattta 62
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 cggaattcttgactaattttcaggtgtgcccaatcatttagagaca--ttttttaattta 262
Query: 63 aattaaaacttaaaagatttagatagatcctcacctgccctaggctggcccaaaacaacg 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 aattaaaacttaaaagatttagatagatcctcacctgtcctaggctggcccaaaacaacg 322
Query: 123 tatct-agggtattgaatacccttagcttgcaggtgtatatagtgctaagtatcacccag 181
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 tatctgagggtattgaatacccttagcttgcaggtgtatatagtgctgagtatcacccag 382
Query: 182 agcttctggggcaccagcaagcattttacatccttgattatctacatcccttttcctctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcttctggggcaccagcaagcattttacatccttgattatctacatcccttttcctctt 442
Query: 242 ttcccctagatggcgcctcagcatgaagcaaggactggcgtgaaactcctcatgttcttg 301
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 ttcccctagatggcgtctcagcatgaagcaaggactggcctgaaactcctcatgttcttg 502
Query: 302 actctgccgccgaagtacagtacga------aacgcaatgttgcaatgataacagaaaca 355
||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 503 actctgccgccgaagtacagtacgaaacgcgaacgcaaagttgcaatgataacagcaaca 562
Query: 356 tttaaatattatttaattgcatttctgcggcatacccatttggagcgtaagtg-tagcta 414
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 563 tttaaatattatttaattgcatttctgcggcatacccatttggaacgtaagtgttagcta 622
Query: 415 gatgtacttttatatgctcatgtttttaggtaaacaagtagccggctctgacataaaaag 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatgtacatttatatgctcatgtttttaggtaaacaagtagccggctctgacataaaaag 682
Query: 475 attgctactctaagttaagtctacacttaactcgttaggcttaatgccgacaggaacttt 534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 attgctactctaagttaagtctacacttaactcgttaggcttaataccgacaggaacttt 742
Query: 535 actaagagcacttacatcttaaggccaaaattactttcatttatttctcctttcagccct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 actaagagcacttacatcttaaggccaaaattactttcatttatttctcctttcagccct 802
Query: 595 agggaaagagcagccatatactgccatgctttcttcaacgccagtgtgctatttctgaag 654
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agggaaaaagcagtcatatactgccatgctttcttcaacgccagtgtgctatttctgaag 862
Query: 655 gcctacaccgtggattaacaagatccctaaatggacccaaa 695
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gcctacaccgtggattaacaagatccctaaatggacccaaa 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1103
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1093
Effective search space: 748705
Effective search space used: 748705
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_b19.g1 MSMg01no477_b19.g1 CHROMAT_FILE:
MSMg01no477_b19.g1 PHD_FILE: MSMg01no477_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:27 2005
(646 letters)
>mm_chr4_21812405_21813450
Length = 1046
Score = 756 bits (391), Expect = 0.0
Identities = 394/395 (99%)
Strand = Plus / Minus
Query: 252 actcattaaggatgctgacaaattaactctgggacagcaaataattgtggtagcccccca 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 actcattaaggatgctgacaaattaactctgggacagcaaataattgtggtagcccccca 987
Query: 312 ctctcttaaaagcattatctgccagcccccagaccgatagatgacaaatgcccggatgac 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ctctcttaaaagcattatctgccagcccccagaccgatagatgacaaatgcccggatgac 927
Query: 372 tcactaccagagtctgctgctgactgaatgggtcgtgtttgctcctcctgctattctcaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tcactaccagagtctgctgctgactgaatgggtcgtgtttgctcctcctgctattctcaa 867
Query: 432 ccctgcctccaaagtgatctcctagtagaaggtaagaagatggcagctttccaaaactcc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ccctgcctccaaagtgatctcctagtagaaggtaagaagatggcagctttccaaaactcc 807
Query: 492 caagcacagcatctaagttttcatcagtctttctccttagaactccagctgacgcaaagc 551
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 caagcacagcatctaacttttcatcagtctttctccttagaactccagctgacgcaaagc 747
Query: 552 ctgccacattcacgttcagggaactggcacaggactggttcgctgaacatgagtactgag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctgccacattcacgttcagggaactggcacaggactggttcgctgaacatgagtactgag 687
Query: 612 ctgcctttctctttccttcatctcctgcttgcttc 646
|||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgcctttctctttccttcatctcctgcttgcttc 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
