BAC Information

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BAC

Clone NameMSMg01-477C21
Chromosome4 (Build37)
Map Location 28,074,976 - 28,075,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477C21.T7 (MSMg01no477_c21.b1)MSMg01-477C21.TJ (MSMg01no477_c21.g1)
ACCAG558592AG558593
length859784
length of high quality
(start - end)
---558 (76 - 633)
definitionCHROMAT_FILE: MSMg01no477_c21.b1 PHD_FILE: MSMg01no477_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:33 2005CHROMAT_FILE: MSMg01no477_c21.g1 PHD_FILE: MSMg01no477_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCTTCCCCCCTCCTCTCTCCCTGATCTCCCTATTCCCCCCAGAGGACTC
TCACATCCTCTTTTACCAAAACACAAATACGAATAATCACGTAAAAAAAC
GCGCTTAAGAAAACAAAGCCGATTCCCTCATTCCTTCCTTTCTCTTCTAT
TTAACGCTCGCCATTGTACCAATGGGATCCGCCCTTTCGGCGGGGAATCC
GCTCACATTTTGATATGACCCTTTTACACACTTCACACTTTCTATCCCTC
CCACCTTTGTCTCCATACCTAGCCTGTCTTGCACTGTTCAGGTAAGTTGG
CGCCGTGGCCGAGCAACCTTGTCACATGGACTCATCTACCACCCAAGGTT
TTTCTCCCCTCTCTTCTCTATTAATTAGAATCCTCGCGTTCCCGCGTCAC
GATTTATTCTCCCCGCTCAATAACTACACGGGCCCACCACCTCCTCCTCC
CCCCGCCCCACACTNTCAGCCTCCCTCCTTCGCAGTTTCCCCCCAGGGAG
ACCCACAACCCACCATATTTACGCCCTGCCCGCTTACGAACAGCTGTTGA
TACAGATTATTCCTGTGGTGTGGGGGGNGGNNGGGGGGGGGGGGGGGAAA
ANNTAGGGTGANGCGGTCCNAGCCCCCCACCACCAATTCCAGATCCCCTC
TTCCCTCGTATACACATATATTGTGCCGTGAAAGCGCCTCTTTTGNTATT
NCGCAAAAACTTGAGCGAATTAANGTTAANAGGTTTNNCCGGNNNCGAAA
TNGTGGATNCTGGNNCNNNNGNNCNATCNTANTCGTACGCNNTGTTTGGN
AAATNTNCCNNGATAAGGGNCCCCNNANAATNANATNTTTANGGTTTNTC
ACNGNTNNN
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATCCACCTTCTTGTATTGAGCAT
AGATAGTTCTTTAAATGCTTCTAAAATTTCTGAGTCTCTTAGTTAGGGTT
TTACTGCTGTGAACAAACACCATGACCAAAGTCACTCTTATAAGAACAAC
ATTTAATTGAGGCTGACTTACATACTCCGAGGTTCAGTCAATTATCATCA
AGGCAAGAGCATAGCAGTGCCCAGGCAGACATGGCACTGGAGAAAGAGCT
GAGAGTTCTATATCTTGTTCCAAAGGCAAAGAGGAGAAGACTGACTTCCA
TGTGGCTAGGAGGAGTGTATCATTGCCCACCCTAACAGTGACACACTTCC
TCCAACATGTCCACACCTCCTAATATTGCCACTCCTTGGCCAAACATATT
CAAACCACCAAGGAAATTTTTGAGATTAATATTAAGAAAATTAATGAAGT
CATTTTATCTTATATGCTCAACATGACTAGCATTTAAAACCATAATTTTA
TATGTACAATATTTAATGACATAAAATATTAATATCATATAAAAGAATGA
ATTCTGAATTCCTCTCAGAAGATGTATTCGTATAGTTTTCACATCAACTA
ATACATAGAATTTAATGATTTATTAATTTTTCTACTTTTACTATAAAGAA
TTTAGTTTATTTCTTTAAAATGCTATAGCTTTTCACGTGTGCTTTANGTG
GATTTTATTAAAAAATCCCTGGTGTAAAATTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_c21.g1 MSMg01no477_c21.g1 CHROMAT_FILE:
MSMg01no477_c21.g1 PHD_FILE: MSMg01no477_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:33 2005
         (558 letters)



>mm_chr4_28074391_28075348
          Length = 958

 Score =  613 bits (317), Expect = e-179
 Identities = 359/373 (96%)
 Strand = Plus / Minus

                                                                       
Query: 186 atagcagtgcccaggcagacatggcactggagaaagagctgagagttctatatcttgttc 245
           ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 958 atagcagtgccaaggcagacatggcactggagaaagagctgagggttctacatcttgttc 899

                                                                       
Query: 246 caaaggcaaagaggagaagactgacttccatgtggctaggaggagtgtatcattgcccac 305
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 caaaggctaagaggagaagactgacttccatgtggctaggaggagtgtatcattgcccac 839

                                                                       
Query: 306 cctaacagtgacacacttcctccaacatgtccacacctcctaatattgccactccttggc 365
           ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct: 838 cctaacagtgacacacttcctccaacacgtccacacctcctaatactgccactcctgggc 779

                                                                       
Query: 366 caaacatattcaaaccaccaaggaaatttttgagattaatattaagaaaattaatgaagt 425
           |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 778 caaacatattcaaaccaccaaggaaaatttcgagagtaatattaagaaaattaatgaagt 719

                                                                       
Query: 426 cattttatcttatatgctcaacatgactagcatttaaaaccataattttatatgtacaat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cattttatcttatatgctcaacatgactagcatttaaaaccataattttatatgtacaat 659

                                                                       
Query: 486 atttaatgacataaaatattaatatcatataaaagaatgaattctgaattcctctcagaa 545
           |||||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 658 atttaatggcataaaatattactatcatataaaagactgagttctgaattcctctcagaa 599

                        
Query: 546 gatgtattcgtat 558
           |||||||||||||
Sbjct: 598 gatgtattcgtat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)