Query= MSMg01no477_i21.b1 MSMg01no477_i21.b1 CHROMAT_FILE:
MSMg01no477_i21.b1 PHD_FILE: MSMg01no477_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:02 2005
(684 letters)
>mm_chr4_152233143_152234226
Length = 1084
Score = 1162 bits (601), Expect = 0.0
Identities = 662/687 (96%), Gaps = 11/687 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggtggcttacttcccagcagtgacgacaatggatgccgtctatgtttctaca 64
|||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggcggcagagttcccagcagtgatgacaatggatgccgtctatgtttctaca 264
Query: 65 agccattctttttccttagattcatatttgtcctctttgcaggtcaccatggcaactctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccattctttttccttagattcatatttgtcctctttgcaggtcaccatggcaactctt 324
Query: 125 cttctaagtaaccggagaattcccacttaaactgtgactaagacatggagaagtcaagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttctaagtaaccggagaattcccacttaaactgtgactaagacatggagaagtcaagag 384
Query: 185 gcacaactagagccccgcatgacacatgtgtgcagccacagggctcgagtctcagcgttt 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacaactagagccccgcacgacacatgtgtgcagccacagggctcgagtctcagcgttt 444
Query: 245 ctccacctactccactctcccttgcagctcaactcacaggcttctcccgtcctgtggatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccacctactccactctcccttgcagctcaactcacaggcttctcccgtcctgtggatt 504
Query: 305 ttccgtacacttaaagtgggctagcaataatgagagagatcaggaagggaagggaagtca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttccgtacacttaaagtgggctagcaataatgagagagatcaggaagggaagggaagtca 564
Query: 365 ccgagaggtcagaatgaaaatctcgttcagatggactttgtccttctggatccgacgtta 424
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct: 565 ccgagaggtcagaatgaaaatcccgttcagatggactttgtcattctggatccgacgtca 624
Query: 425 gggagtctaatgccagggtgtttgtggtcagcatggttaaaacacagtaccaagtgggaa 484
|| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ggaagtttaacgccagggtgtttgtggtcagcatggttaaaacacagtacaaagtgggaa 684
Query: 485 aagatttccagacaaccatcattccattccaagtgaagagtaa-g-----gtg-tgaccg 537
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 685 aagatttccagacaaccatcattccattccaagtgaagagtaaagcttaagtggtgaccg 744
Query: 538 catagagactcctacacgaagtacatgtgaccatgagggtggaatctagtgtagtctctg 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 745 catagagactcctacacgaagtacatgtgaccatgagggtgaaatctagtgtagtctctg 804
Query: 598 acagatagcatagaggtcagcaggccataaaatacatatggcatcttaacccctaaggat 657
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acag----catagaggtcagcaggccataaaatacatatggcatcttaacccctaaggat 860
Query: 658 ggggttaatggataaaggtctggtggg 684
|||||||||||||||||||||||||||
Sbjct: 861 ggggttaatggataaaggtctggtggg 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_i21.g1 MSMg01no477_i21.g1 CHROMAT_FILE:
MSMg01no477_i21.g1 PHD_FILE: MSMg01no477_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:02 2005
(578 letters)
>mm_chr4_152368262_152369239
Length = 978
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%)
Strand = Plus / Minus
Query: 1 tgacatcctttaacccttgatcatcttgaaaaaattcttaattagctaattaattagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgacatcctttaacccttgatcatcttgaaaaaattcttaattagctaattaattagtta 597
Query: 61 tgggtctcatcatgctaggcaagttctataactgagctgtggccccagcctcacctgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgggtctcatcatgctaggcaagttctataactgagctgtggccccagcctcacctgcca 537
Query: 121 caaatcccctgtgtatgtttcagtgttcatgtgtgtagagatgcctatctgtatagctgt 180
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 536 caaatcccctatgtatgtttcagtgttcatgtgtgtagagatgcctgtctgtatagctgt 477
Query: 181 gtgtgtatatgtgagcatgcacgcgaaggccagagaatctacctcatttctccaaactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtgtgtatatgtgagcatgcacgcgaaggccagagaatctacctcatttctccaaactgg 417
Query: 241 gcctttcacttgcctgaagcttgccagataggctaagctgactcagcaaaagacctaaga 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 416 gcctttcacttgcctgaagcttgccagataggctaagctgactgagcaaaagacctaaga 357
Query: 301 gattccaacttcctggagctgggctcaccagcatgcacctcctctgtggtgatttgaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gattccaacttcctggagctgggctcaccagcatgcacctcctctgtggtgatttgaata 297
Query: 361 tgcttgactaagggagtggcactatttgggggtgtggccttgacggagtaggtgtgtcaa 420
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 296 tgcttgactaagggagtggcactatttgggggtgtggccttgatggagtaggtgtgtcat 237
Query: 421 tgtgggcgtgggctttaagaccctcctcctaaccacatgagagccagtcttctcttagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgtgggcgtgggctttaagaccctcctcctaaccacatgagagccagtcttctcttagtg 177
Query: 481 accttcaaatgaagatgtagaactctcagctcctcctgcacgatgacactgccatgctcc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 accttcaaatgaagatgaagaactctcagctcctcctgcacgatgacactgccatgctcc 117
Query: 541 ctccttgatgataatggactgaacctctggacctgtaa 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctccttgatgataatggactgaacctctggacctgtaa 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
