AATTTGCGGCGCTAAACGACTCATATAGTGTTGCGGATCCGCGGAATTCC
TTTCAATCCTGACTAATTTGCTAAGACCTATTCAGCATTTTTCTACCTAT
CTTGTGTCTGTGAGACCTCAACACTTGAAATGCTATGAGAGTCTGAAGAA
CTTGGTAGAGGAAGGTGCATTCTCAGCAGACTTTGTTGTGCTTAGTGAGA
TCCCATTCTGTGCCACTGCATTTGAAAGCAGAATTTTTCAATAAGCAGCT
TTCCAGGACCACGAGTTTATACCCTTTTTCCTTTTCCTTCCTTCCTATGG
ACTTCTTCAAATTTGGGACTTGGAAGGATACACTCTAGAAACATTCTAAA
GACATTAACTATGGAGGTTAAGAACTCTTTTAAAACTTGGACCTTAGAAC
AATGTAACCAAAAAACGGAAATAGGTCCAGTGTTTAAAGGACCAATTTGA
TTTTGTCAACACCAGATTATCTTCAACCGCATATAGGATTAATTATGAAG
AAACATCTCATGCTACTAGGATCATAGAAATTCTTTATTTAAAAGAGCAT
GGAACTAGTTTGTTCTTGCCTTGTTTCTCAACCAGAGTTCATCATATTAC
AGATTGGACGTTTAGTGATAACCTAAAAGAACAAAGCTTAACCATCTGAA
TAAACCATTTGTAAGTGTTATAAAATCAGAGACTTACATTTTAACTCTGT
TTATAATCATGACTTATAAC

NCCCCAATTGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACACTGCACCTTCTGGAAC
TATGAAAACTAGCTAGGAAGGCCAAAGTTTCTAGTTCCATTCCAGCTTGA
TTTTTCTATATTGTTTGTCCAAATATAGGATGCATTCATCAATAATGTCC
TTTTTAAAAGGAAGATATTTATAAATATTTCTAATTTTCTCTCTCAGAAT
GTTTGTGTTTGTTGTGTGTTGTGTGCATGTGAGTTAGAGGTTAGAGGCAT
TAGATCACCTGGAGCTGGAGTTACGGGCAGATGTGAACTGCCTTATATAA
ATTCTAGGAAATGAATTCTGGTCCTTTGCAAGTAAGTGCTCTTAACTGCT
AAGCAACCTCTCCAGCCCAGCAATAAACTGCATCTCATATCTAGAACTGG
CGGGGCTGTCCAAAAGAATGACAAGAGCCTATATTACATGGTGTACTTCT
GGGGGCTCCCTGAACAACATCATAGAAGGACATCTAATCACATACCTGAC
ACTTGGGTTTTTGTTTAATAACATGTGGCTTCTGGGAACAGTAAAATTCT
ATTATTCTAATAATAGAATGATAATTCTATTATTATTTCTTTGTTGTTGT
TATGTTTCTTAATTTCGTTATACACCAGTAGAAAACAGTATCTCTAATAG
AGAATAATATCTAGAATATGTAAATAACCTCAAAGCAA

Query= MSMg01no477_j02.b1 MSMg01no477_j02.b1 CHROMAT_FILE:
MSMg01no477_j02.b1 PHD_FILE: MSMg01no477_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:02 2005
         (682 letters)



>mm_chr4_25451324_25452405
          Length = 1082

 Score = 1216 bits (629), Expect = 0.0
 Identities = 665/677 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcctttcaatcctgactaatttgctaagacctattcagcatttttctacctatct 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 881 ggaattcttttcaatcctgactaatttgctaagacctattcagcatttttctacccatct 822

                                                                       
Query: 65  tgtgtctgtgagacctcaacacttgaaatgctatgagagtctgaagaacttggtagagga 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgtgcctgtgagacctcaacacttgaaatgctatgagagtctgaagaacttggtagagga 762

                                                                       
Query: 125 aggtgcattctcagcagactttgttgtgcttagtgagatcccattctgtgccactgcatt 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 761 aggtgcattctcagcagactttggtgtgcttagtgagatcccattctgtgccactgcatt 702

                                                                       
Query: 185 tgaaagcagaatttttcaataagcagctttccaggaccacgagtttataccctttttcct 244
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 701 ggaaagcagaatttttcaataagcagctttccaggaccatgagtttataccctttttcct 642

                                                                       
Query: 245 tttccttccttcctatggacttcttcaaatttgggacttggaaggatacactctagaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 641 tttccttccttcctatggacttcttcaaatttgggacttggaaggatacaccctagaaac 582

                                                                       
Query: 305 attctaaagacattaactatggaggttaagaactcttttaaaacttggaccttagaacaa 364
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 581 attctaaagacattaacaatggaggtcaagaactcttttaaaacttggaccttagaacaa 522

                                                                       
Query: 365 tgtaaccaaaaaacggaaataggtccagtgtttaaaggaccaatttgattttgtcaacac 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtaaccaaaaaaaggaaataggtccagtgtttaaaggaccaatttgattttgtcaacac 462

                                                                       
Query: 425 cagattatcttcaaccgcatataggattaattatgaagaaacatctcatgctactaggat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagattatcttcaaccgcatataggattaattatgaagaaacatctcatgctactaggat 402

                                                                       
Query: 485 catagaaattctttatttaaaagagcatggaactagtttgttcttgccttgtttctcaac 544
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 401 catagaaattctttatttaaaagagcatggaacgactttgttcttgccttgtttctcaac 342

                                                                       
Query: 545 cagagttcatcatattacagattggacgtttagtgataacctaaaagaacaaagcttaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cagagttcatcatattacagattggacgtttagtgataacctaaaagaacaaagcttaac 282

                                                                       
Query: 605 catctgaataaaccatttgtaagtgttataaaatcagagacttacattttaactctgttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 catctgaataaaccatttgtaagtgttataaaatcagagacttacattttaactctgttt 222

                            
Query: 665 ataatcatgacttataa 681
           |||||||||||||||||
Sbjct: 221 ataatcatgacttataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_j02.g1 MSMg01no477_j02.g1 CHROMAT_FILE:
MSMg01no477_j02.g1 PHD_FILE: MSMg01no477_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:03 2005
         (652 letters)



>mm_chr4_25247939_25248990
          Length = 1052

 Score = 1253 bits (648), Expect = 0.0
 Identities = 651/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacactgcaccttctggaactatgaaaactagctaggaaggccaaagtttctagttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacactgcaccttctggaactatgaaaactagctaggaaggccaaagtttctagttcc 260

                                                                       
Query: 61  attccagcttgatttttctatattgtttgtccaaatataggatgcattcatcaataatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccagcttgatttttctatattgtttgtccaaatataggatgcattcatcaataatgt 320

                                                                       
Query: 121 cctttttaaaaggaagatatttataaatatttctaattttctctctcagaatgtttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttttaaaaggaagatatttataaatatttctaattttctctctcagaatgtttgtgt 380

                                                                       
Query: 181 ttgttgtgtgttgtgtgcatgtgagttagaggttagaggcattagatcacctggagctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgtgtgttgtgtgcatgtgagttagaggttagaggcattagatcacctggagctgg 440

                                                                       
Query: 241 agttacgggcagatgtgaactgccttatataaattctaggaaatgaattctggtcctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttacgggcagatgtgaactgccttatataaattctaggaaatgaattctggtcctttg 500

                                                                       
Query: 301 caagtaagtgctcttaactgctaagcaacctctccagcccagcaataaactgcatctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtaagtgctcttaactgctaagcaacctctccagcccagcaataaactgcatctcat 560

                                                                       
Query: 361 atctagaactggcggggctgtccaaaagaatgacaagagcctatattacatggtgtactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctagaactggcggggctgtccaaaagaatgacaagagcctatattacatggtgtactt 620

                                                                       
Query: 421 ctgggggctccctgaacaacatcatagaaggacatctaatcacatacctgacacttgggt 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgggggctccctgaacaacatcgtagaaggacatctaatcacatacctgacacttgggt 680

                                                                       
Query: 481 ttttgtttaataacatgtggcttctgggaacagtaaaattctattattctaataatagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtttaataacatgtggcttctgggaacagtaaaattctattattctaataatagaa 740

                                                                       
Query: 541 tgataattctattattatttctttgttgttgttatgtttcttaatttcgttatacaccag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgataattctattattatttctttgttgttgttatgtttcttaatttcgttatacaccag 800

                                                               
Query: 601 tagaaaacagtatctctaatagagaataatatctagaatatgtaaataacct 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagaaaacagtatctctaatagagaataatatctagaatatgtaaataacct 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)