BAC Information

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BAC

Clone NameMSMg01-478B11
Chromosome4 (Build37)
Map Location 149,942,802 - 150,209,197
singlet/doubletdoublet
Overlap geneRere, Slc45a1
Upstream geneClstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478B11.T7 (MSMg01no478_b11.b1)MSMg01-478B11.TJ (MSMg01no478_b11.g1)
ACCAG559288AG559289
length725734
length of high quality
(start - end)
325 (315 - 639)508 (70 - 577)
definitionCHROMAT_FILE: MSMg01no478_b11.b1 PHD_FILE: MSMg01no478_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:43 2005CHROMAT_FILE: MSMg01no478_b11.g1 PHD_FILE: MSMg01no478_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,942,802 - 149,943,125)(150,208,696 - 150,209,197)
sequence
ATTTGCGGCGGTAAAANAACCACAATCGGTACTGGGGCGNGGAANNCAGG
GCTTCAAACAATACGGGGCNGNGCCACCAGCCTCTGCTGCTCTCTTCCTA
CTCCATTCTCCCGCCTCCCCAGGGAACACTCCACCTTCAACCCCTGGTCT
ACCATTGGATCTTAACTCCTCAAAGCTCAGTGCAGCCTGATCCTCACTGC
CCTCTAAAAGTCATCTACAAGCAGTCAGTTTTTCTTTCTTTATACCTTGT
TCTCCTTGGAGTTTCCAGAATGTTCCTATGTCCTTCCTGGGCAACTGGAA
GCCTAGCTTGAGCTCACCTGGCAGGCTTATGCTCTTCCTTGTCAAGTCCC
CTAAGTCAAGCAGAGCTTGCTTCCTCTTCCAAGCTCCACCCACCACCCTT
TGTCCCTCTACTGCTTTCTTTATAGGCCCAAGGTCCATCTCTACCTATTT
GCTTCTCTGGGCTGATTGGAACTCCTTGAGGACTTGCTCTAGAGGTGCTG
TGTGCAGCTCAGGCTGCCTGTTGATTGTATGACTGATGCAGAAGTCAAGT
ACCAGAAGTCTGCTCTTCATACCAAGAAGTGTGCGCAGCTTTCTTGTGCC
TCACAGAATTCTCCCACTGAACTATATCAATTATATTGTTTATTGACAGT
GGTGAGTCATATCCAGCACTGGGAGAACTCGGAACTCGCAGAGCCTGCAG
GACTAGAGCGGGAGGCTGTAGATGG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGACCTGAAGTTGTACCACTCCAACATCT
GCTTCTGTCTTCATAAGGCCCTTTTGCAAGGACACCCATCATTGGATTGA
GTGGCAATGTGCTTTCTCTTAGCCTGCCACAGCTTCAGTGATTGTATTTC
CAAACAGGGTCCCCTCCTGAGACATGGGGATTAGAATTTCAGTGTCCTCT
TGTGGAGCACAATTCAACCTATAACGGCATCTCTAGCTTACGGGTCAAAA
CAGAAATTTTATTTCTCGCCGTGTAAACCTTCTTGCGGGTCTCATCAAGC
AATGGCACTAATCACGCTCTTGCTTCAGCTGAGCATCGCGGAAGTCAGCT
CTGACCGGCCTCCCTGGCTCATGAGCCACAGCCCTCGTTTGCCGTCAGTG
TGCCTCCCTACCACATTTTCTTGTAATCTACAATATTTATTTCTCGTGTT
ATTTTTACTCGTACGCCAGGCTTTCAGTATTTCATCTTGCAGTTTATTTT
AGTTACAGAAACTTTGACCTGACTTCCCAGGAGGGTAAATTAGATTTGTT
TCTCATCTTCTTTCTTTTTCCAGTTACTCAGTAGACAACACTTCTTTGTT
GAGAATCTATGACTGTCTTGNNAGTTTTACAGCCTGCCTTCTGACTGCTT
GAAACATCAGCTTTTTGCCTCTACTGACTGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_b11.b1 MSMg01no478_b11.b1 CHROMAT_FILE:
MSMg01no478_b11.b1 PHD_FILE: MSMg01no478_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:43 2005
         (325 letters)



>mm_chr4_149942602_149943326
          Length = 725

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctggcaggcttatgctcttccttgtcaagtcccctaagtcaagcagagcttgcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctggcaggcttatgctcttccttgtcaagtcccctaagtcaagcagagcttgcttcc 260

                                                                       
Query: 61  tcttccaagctccacccaccaccctttgtccctctactgctttctttataggcccaaggt 120
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tcttccgagctccacccaccaccctttgttcctctactgctttctttataggcccaaggt 320

                                                                       
Query: 121 ccatctctacctatttgcttctctgggctgattggaactccttgaggacttgctctagag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatctgtacctatttgcttctctgggctgattggaactccttgaggacttgctctagag 380

                                                                       
Query: 181 gtgctgtgtgcagctcaggctgcctgttgattgtatgactgatgcagaagtcaagtacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctgtgtgcagctcaggctgcctgttgattgtatgactgatgcagaagtcaagtacca 440

                                                                       
Query: 241 gaagtctgctcttcataccaagaagtgtgcgcagctttcttgtgcctcacagaattctcc 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gaagtctgctcttcataccaagaagtgtgcgctgctttcttgtgcctcacagaattctcc 500

                                   
Query: 301 cactgaactatatcaattatattg 324
           ||||||||||||||||||||||||
Sbjct: 501 cactgaactatatcaattatattg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no478_b11.g1 MSMg01no478_b11.g1 CHROMAT_FILE:
MSMg01no478_b11.g1 PHD_FILE: MSMg01no478_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:43 2005
         (508 letters)



>mm_chr4_150208290_150209197
          Length = 908

 Score =  917 bits (474), Expect = 0.0
 Identities = 495/502 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ctgaagttgtaccactccaacatctgcttctgtcttcataaggcccttttgcaaggacac 66
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ctgaaattgtaccactccaacatctgcttctgtcttcataaggcccttttgcaaggacac 849

                                                                       
Query: 67  ccatcattggattgagtggcaatgtgctttctcttagcctgccacagcttcagtgattgt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 848 ccatcattggattgagtggcaatgtgctttctcttagcctgccacagctacagtgattgt 789

                                                                       
Query: 127 atttccaaacagggtcccctcctgagacatggggattagaatttcagtgtcctcttgtgg 186
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 788 atttccaaacagggtcccctcctgagacatggggattagaagttcagtgtcctcttgtgg 729

                                                                       
Query: 187 agcacaattcaacctataacggcatctctagcttacgggtcaaaacagaaattttatttc 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 728 agcacaattcaacctataacggcatctctagcttacgggtcaaaacagaaattttaattc 669

                                                                       
Query: 247 tcgccgtgtaaaccttcttgcgggtctcatcaagcaatggcactaatcacgctcttgctt 306
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcgccgtgcaaaccttcttgcgggtctcatcaagcaatggcactaatcacgctcttgctt 609

                                                                       
Query: 307 cagctgagcatcgcggaagtcagctctgaccggcctccctggctcatgagccacagccct 366
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 608 cagccgagcatcgcggaagtcagctctgaccggtctccctggctcatgagccacagccct 549

                                                                       
Query: 367 cgtttgccgtcagtgtgcctccctaccacattttcttgtaatctacaatatttatttctc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtttgccgtcagtgtgcctccctaccacattttcttgtaatctacaatatttatttctc 489

                                                                       
Query: 427 gtgttatttttactcgtacgccaggctttcagtatttcatcttgcagtttattttagtta 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgttatttttactcgtacgccaggctttcagtatttcatcttgcagtttattttagtta 429

                                 
Query: 487 cagaaactttgacctgacttcc 508
           ||||||||||||||||||||||
Sbjct: 428 cagaaactttgacctgacttcc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)