Query= MSMg01no478_d15.b1 MSMg01no478_d15.b1 CHROMAT_FILE:
MSMg01no478_d15.b1 PHD_FILE: MSMg01no478_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:54 2005
(631 letters)
>mm_chr4_131660499_131661535
Length = 1037
Score = 978 bits (506), Expect = 0.0
Identities = 607/666 (91%), Gaps = 42/666 (6%)
Strand = Plus / Plus
Query: 1 tacatagtgagaccctgttt----------------cacacacacacacactcacacaaa 44
|||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct: 179 tacatagtgagaccctgtttcacatacacacacacacacacacacacacacacacacaca 238
Query: 45 agaaaaaaaggaaagaaagatccagaggtgcaagtaaggagaatctagctcactttactt 104
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 239 agaaaaaaaggaaagaaagatccagaggtgcaagtaaggagaatctagcttactttattt 298
Query: 105 gaaaatagaagttggatattggtaccaggatgggatctggggtggacaaaaaaccaagtg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaaatagaagttggatattggtaccaggatgggatctggggtggacaaaaaaccaagtg 358
Query: 165 tgtgaggcaggttccattgggctatgtcttttaccccctaaacaggacaactccaatggc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtgaggcaggttccattgggctatgtcttttaccccctaaacaggacaactccaatggc 418
Query: 225 aagcatcaccccacccctcatca-------------tttttttcccacccctgccaccat 271
||| ||||||||||||||| ||| |||||||| ||||||||
Sbjct: 419 aagtatcaccccacccctcctcaccccacccccacc-------cccaccccggccaccat 471
Query: 272 gttctttcttccctggataagtatgtggtggattttttaccatcagacgtctgcacatcg 331
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 472 gttctttcttccctggataaatatgtggtagattttttaccatcagatgtctgcacatcg 531
Query: 332 gtttgggaagggtcaaggaacaggagggaaaaatctca------tgtaagggtagcagat 385
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 532 gtttgggaagggtcaaggaacaggagggaaaaatctcatttctctgtaagggtggcagat 591
Query: 386 ccctcggaagccattaactcctacctctgcccctccaccatgcagaggcccagaaagagc 445
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 592 ccctcggaagccattaactcctacctctgcccctccatcatgcagaggcccagagagagc 651
Query: 446 cagacactggacatagaggacgaggtatcaaagccatgcatgttccctgtgtccatctca 505
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 652 cagacactggacatagaggacgaggtatcaaagccatgcgtgttccctgtgtctatctca 711
Query: 506 ggactccagaggagacgctagaagatgagtctcaggtggctgttacctgtgtagacatct 565
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 712 ggactccagaggagactctagaagatgagtctcaggtggctgctacctgtgtagacatct 771
Query: 566 gtacagagatcccatctctgtgactacgttgttcagccaaaggccacactgacctctctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gtacagagatcccatctctgtgactacgttgttcagccaaaggccacactgacctctctt 831
Query: 626 gcctcc 631
||||||
Sbjct: 832 gcctcc 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1037
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1027
Effective search space: 637767
Effective search space used: 637767
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d15.g1 MSMg01no478_d15.g1 CHROMAT_FILE:
MSMg01no478_d15.g1 PHD_FILE: MSMg01no478_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:54 2005
(661 letters)
>mm_chr4_131833219_131834279
Length = 1061
Score = 687 bits (355), Expect = 0.0
Identities = 385/409 (94%), Gaps = 22/409 (5%)
Strand = Plus / Minus
Query: 1 aagtattttgtaaatataggtaagaatgctaattcagcaatccattatcactagttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagtattttgtaaatataggtaagaatgctaattcagcaatccattatcactagttgaac 350
Query: 61 tatcaattgtggtgcatacctataatctcagcattcaagaaaccaaggcaacagagtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tatcaattgtggtgcatacctataatctcagcattcaagaaaccaaggcaacagagtctt 290
Query: 121 aggtacacagtgagaccctaactaaaaaagatggccacctcccaaattaaaatcaacaag 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 289 aggtacacagtgagaccctaactaaaaaagacggccacctcccaaattaaaatcaacaag 230
Query: 181 atggtgataagggtatgcttttgctcata----------------------tcactttta 218
|||||||||| |||||||||||||||||| |||||||||
Sbjct: 229 atggtgataaaggtatgcttttgctcataacttggtataaaaaaatgctgatcactttta 170
Query: 219 tgcaggcttctgaaaacagtatcaggaacaggagatgggtcagtggttaaaagaacttgt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgcaggcttctgaaaacagtatcaggaacaggagatgggtcagtggttaaaagaacttgt 110
Query: 279 tgctcttgcagagggcctagcttctgtccccaccatccacacaatgacttacaacccagt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgctcttgcagagggcctagcttctgtccccaccatccacacaatgacttacaacccagt 50
Query: 339 tctagggggactcaatgcccttttcaggactctaaatcaagcaccgatg 387
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tctagggggactcaatgcccttttcaggactctaaatcaagcaccgatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
