BAC Information

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BAC

Clone NameMSMg01-479I03
Chromosome4 (Build37)
Map Location 15,115,275 - 15,115,631
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479I03.T7 (MSMg01no479_i03.b1)MSMg01-479I03.TJ (MSMg01no479_i03.g1)
ACCAG560372AG560373
length741744
length of high quality
(start - end)
599 (80 - 678)667 (78 - 744)
definitionCHROMAT_FILE: MSMg01no479_i03.b1 PHD_FILE: MSMg01no479_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:32 2005CHROMAT_FILE: MSMg01no479_i03.g1 PHD_FILE: MSMg01no479_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTGTATTCTCTCAGAAACCTCTCATTTGTCAAAT
GATAAGTAAACTCCAGATAAGTCCTGTCAACCAATAGTCGGTTCCCCCGT
CTGCCTATTCATTCCACTTACTCCTGAGGGTGGGATTCCCCACTTCCCCG
TCTTGGGAATACCCTCCCCCAGTTATCTCAACCGAAAAGTTCAAATGTAC
ATCTAAGCAAAATAATTACTTTAAGCTCCCTAACTTAACTGTTTCAGCAA
CCAGCCAGCTTCTGGCATTCCCTCAAAAATCTGCATTCTGGAAAACTTCA
AAGTGGCTAGTCTCCGGTGGTCCATCCTCACAGACTGCTCTCACTCCTGC
CTCCATGTCCTCAGATGTTCCTGAAGAGCCTGGACAGTGGGTAAAACAGC
CTGTTCTTCCAGGATGTTACCAACATCCTAAGATCTCTTAGATCCCCAAA
GATATCAATGCCCCTGGACAGCATGACAGGCCTTATCAGGACACAGTCTA
AAGGGCACCCCCTTTCCTGACTCACTAGTCACCCTTTCCTAAAAGGGAGG
GATGTTAGCCCCATCCTGCCTTCAACAACCCAGCTTAGTCATCTCCAGCC
ACACCCTTTAAAGGGGCTCTGTTATCAGAGCCAGCTCTCTGTCTTCAGGT
TTCTCTGTCTGTCTCTGTCTCTCTTGTTCCATGTTGAGGGC
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGCTGCAGAATTCCACACCAATCAGAGTGGCT
AAGATCAAAAACTCAGGTGACAGCACATGTTGTGGATGTGGGGAAAGAGG
AACACTCCTCCATTGCTGGTGGGATTTCAAACTGGTACAACCACTCTGGA
AATAAATCTGGAGGTTGCTCAGAAAATTGGAAATATATCTATCTACCTGA
AGACCCAGCTATACCACTCTTGGACATATATCCAAAAGATGCCCCACCAC
ACTACAGGGGCACATGTTCTACCATGTTTATTGAGGCCTTATTTGTGATA
GCTAGAAACAAACCAGATATCCCACAGTGGAAGAAAGGGTACTGTCTTAG
TCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGG
AGGAAAGGGTTTATTCAGCTTACCTTTCCACATTGCTGTTCATCACCAAG
GAAGTCAGGGCTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTAATGCAGA
GGTCATGGAGAGATGTTCCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGC
CTGTTCTCTTATAGAACCCAAGACTACCAGCCAGAGATGGTCCCACCCAC
AAGGGGCCTTTCCTCCTTGATCACTAATCGAGAAAATTTCTTACAGTTGG
ATCTCATGGAGGCATTTCCTCAAATGAAGCTCCTTTCTCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_i03.b1 MSMg01no479_i03.b1 CHROMAT_FILE:
MSMg01no479_i03.b1 PHD_FILE: MSMg01no479_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:32 2005
         (599 letters)



>mm_chr4_15114633_15115631
          Length = 999

 Score =  675 bits (349), Expect = 0.0
 Identities = 355/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 243 ctcaaaaatctgcattctggaaaacttcaaagtggctagtctccggtggtccatcctcac 302
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 999 ctcaaaaatctgcattctggaaaacttcaaagtggctagtctccgttggtccatcctcac 940

                                                                       
Query: 303 agactgctctcactcctgcctccatgtcctcagatgttcctgaagagcctggacagtggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 agactgctctcactcctgcctccatgtcctcagatgttcctgaagagcctggacagtggg 880

                                                                       
Query: 363 taaaacagcctgttcttccaggatgttaccaacatcctaagatctcttagatccccaaag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 taaaacagcctgttcttccaggatgttaccaacatcctaagatctcttagatccccaaag 820

                                                                       
Query: 423 atatcaatgcccctggacagcatgacaggccttatcaggacacagtctaaagggcacccc 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 819 atatcaatgcccctggacagcatgacaggccttatcaggacacagtctaaagagcacccc 760

                                                                       
Query: 483 ctttcctgactcactagtcaccctttcctaaaagggagggatgttagccccatcctgcct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctttcctgactcactagtcaccctttcctaaaagggagggatgttagccccatcctgcct 700

                                                                    
Query: 543 tcaacaacccagcttagtcatctccagccacaccctttaaaggggctctgttatcag 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tcaacaacccagcttagtcatctccagccacaccctttaaaggggctctgttatcag 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)