Query= MSMg01no479_j14.b1 MSMg01no479_j14.b1 CHROMAT_FILE:
MSMg01no479_j14.b1 PHD_FILE: MSMg01no479_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:40 2005
(239 letters)
>mm_chr4_141291048_141291686
Length = 639
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Minus
Query: 1 tgagccacaccctcagtactttcgctcctgtcttttttaatcgaattattatttttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgagccacaccctcagtactttcgctcctgtcttttttaatcgaattattatttttgaac 380
Query: 61 tattgtccttcataacaaccattcatgacaaaacctgatttggacaagcgtgagcaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tattgtccttcataacaaccattcatgacaaaacctgatttggacaagcgtgagcaacca 320
Query: 121 gccctgaccaaagtagctgcagggaagctgcagggaagctatgcccaggactccgcatcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 gccctgaccaaagtagctgcagggaagctgcagggaagctatgcccaggactccacatcc 260
Query: 181 ctgcatcaggcaggatctgaccctttccctgaagcaggaaagtccctaagtgggtgcag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgcatcaggcaggatctgaccctttccctgaagcaggaaagtccctaagtgggtgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no479_j14.g1 MSMg01no479_j14.g1 CHROMAT_FILE:
MSMg01no479_j14.g1 PHD_FILE: MSMg01no479_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:40 2005
(467 letters)
>mm_chr4_141091795_141092662
Length = 868
Score = 828 bits (428), Expect = 0.0
Identities = 458/468 (97%), Gaps = 1/468 (0%)
Strand = Plus / Plus
Query: 1 aagggtgaaggggagattactttctgttaccttctcatgctctgctcccattaaaggtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagggtgaaggggagattactttctgttaccttctcatgctctgctcccattaaaggtgt 260
Query: 61 actaaccaaataaaatccattcgtctcaaagtgagaactgtcgcttttacgatacaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaccaaataaaatccattcgtctcaaagtgagaactgtcgcttttacgatacaggag 320
Query: 121 ttttggggacacacatctgcagaggcttcaaataatctttttacctatagcatctgataa 180
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 ttttggggacacacatctgcagaggcttcaaataatctttttaccaagagcatctgataa 380
Query: 181 agcgctgctgtaaacgcggggtcagcagtgtgccggtgagccttcggctat-gctgcgtt 239
|||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 381 agcgctgctgtaaacgcggggtcagcagtgtgccggtgagccttcgtctagcgccgcgtt 440
Query: 240 cctcgggctctccgggcagccctcctgcgagcctcctcccgccctccctgccgtgcattc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgggctctccgggcagccctcctgcgagcctcctcccgccctccctgccgtgcattc 500
Query: 300 ggagcggctccgcagattcccacataaagcgccccctggccgccatcttagagagtcatt 359
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 501 ggagcggctccgcagattcccacataaagtgggtcctggccgccatcttagagagtcatt 560
Query: 360 cacaccagccggaccgcggcaccacgcttccaagcctcccaggactgcgcccaacctcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaccagccggaccgcggcaccacgcttccaagcctcccaggactgcgcccaacctcct 620
Query: 420 ccctcgctgctctccctctccctcggcttgcacagggggtcaaactcc 467
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctcgctgctctccctctccctcggcttgcacagggggtcaaactcc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
