BAC Information

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BAC

Clone NameMSMg01-479L10
Chromosome4 (Build37)
Map Location 70,887,849 - 70,888,311
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565
Downstream geneLOC100039979, LOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479L10.T7 (MSMg01no479_l10.b1)MSMg01-479L10.TJ (MSMg01no479_l10.g1)
ACCAG560528AG560529
length749732
length of high quality
(start - end)
481 (71 - 551)388 (323 - 710)
definitionCHROMAT_FILE: MSMg01no479_l10.b1 PHD_FILE: MSMg01no479_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:48 2005CHROMAT_FILE: MSMg01no479_l10.g1 PHD_FILE: MSMg01no479_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGTTACCAATGGCAAGGCTGTGGGTTCCATCACTAGCAGAATA
TACAAGCACACAGAAGCACACACATGCACACACACATACACACACAGAGA
CAGAGACAGACAGAGACAGAGACAAAGATTAAGAATGAAAGAGACAGAGA
CACTAAAAGAGACAGGAAGAAAGAAAATGACAGAGAGAGAGAAAGAGGGA
GAGAGAGAGAGAGGGAGAGACAGAGAGAGACAGAGAGAGACAGGTCTTTT
CTTAAAAAAAACTATTATTTTTTGACAAACTTGTTCATCTGGTGATTTTG
TTGCAGTATTATTTCAGCTAATAATGAATGTAGGCATTAAGATAAATGTC
TGAACATACAAGGACACAGTCGATGTTATGTAACCTCTAATTGGATGATT
CAACAGAATCTATATGAACAGGCTAGACAAATATATGAGTCACGCAGGCC
ACCTGACTGATAAGAAAAACGGATAACAATAAAACAGCCCAAGAGGAAAG
GCATTGTGCCCTAATTAGTAAACCATTTCCAAAGCTGGTCACTATTGTTT
ATCTCATGATAAAGATGCCTAAAACAAAGGAAACAGCTAATGGGGCCCTT
ATCTATCGAGAAAGCAGAGAGAATCTTCTGACTAGAAATGCTCAGTCAGT
TAACCACAGCATCGCTGTAATTTTAATGAGGCCCACTTGGTTGATTTTN
NGCCCGATGAAGTGGGAGGCCTGGNGGNCGCCTTTCAAATACATGTAGGT
GAACTATAGTTTCCAACAAACACAATCTCTGNGTAGATCTGTGCCCCATT
TTATAATTGGGTTATTTGTTTTTTGACTTCTGGTTTCTTGAGTTACTTTG
TTTCCTTTTATGCATATATTGGATATAAAAATATCCAAAGTGCATACCCT
CTGTCTGATATAAGGTTGGTAAAGAACTTTATCCATTCTCTAGGCTGTTT
TCTATTTCTTTTGAAAAGGTGTTCCTTCCCTTACAGAAACTTTTCAGTTT
CATGAGGTCCCATTTNATAANGGTTGATCTTAGTGCATGTGCTGTTGGTA
TTCTGTTCAGGAAGTTGTCTTCTGTTCCAATGAATTTAGGAATATTCTCG
CCGGGTGGTGGTGCCACATGTCTTTAGTACCAGCACTTTGGAGGCAGAGA
CAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCA
GGACAGCCAGGGAAACACAGAGAAACCCTGTCTCAAAAAACTCAAAAAAA
AAAAAAAAGAAAAGAAAAGAAAAAAAGAATAGTATCTACTCTTTCTTCAT
TCAGATTTATATTGTATATTCAGTTTTATGTTCAGTTTTATGTTGTGGTT
CTTGATCTACTTGGACTTGAGTTTTGTGCAGGGTGATAGATATGGGCCTA
TTTGCATTCATCTACATGCAGACATCCAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_l10.b1 MSMg01no479_l10.b1 CHROMAT_FILE:
MSMg01no479_l10.b1 PHD_FILE: MSMg01no479_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:48 2005
         (481 letters)



>mm_chr4_70887428_70888311
          Length = 884

 Score =  777 bits (402), Expect = 0.0
 Identities = 448/472 (94%), Gaps = 17/472 (3%)
 Strand = Plus / Minus

                                                                       
Query: 18  cactagcagaatatacaagcacacagaagcacacacatgcacacacacatacacacacag 77
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cactagcagaacatacaagcacacagaagcacacacatgcacacacacatacacacacag 825

                                                                       
Query: 78  agacagagacagacagagacagagacaaagattaagaatgaaagagacagagacactaaa 137
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 824 agacagagacaggcagagacagagacaaagattaagaatgaaagagacagagacagtaaa 765

                                                                       
Query: 138 agagacaggaagaaagaaaatgacagagagagagaaagagggagagagagagagagggag 197
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 764 agagacaggaagaaagaaaatgacagagagagagaaa----gagagagagagagagggag 709

                                                                       
Query: 198 agacagagagagacagagagagacaggtcttttctt---aaaaaaaactatta-----tt 249
           ||||||||||||||||||||||| ||||||||||||   ||||||||||||||       
Sbjct: 708 agacagagagagacagagagagagaggtcttttcttaaaaaaaaaaactattacaggg-- 651

                                                                       
Query: 250 ttttgacaaacttgttcatctggtgattttgttgcagtattatttcagctaataatgaat 309
              ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 650 ---tgacaaactagttcatctggtgattttgttgcagtattatttcagctaatcatgaat 594

                                                                       
Query: 310 gtaggcattaagataaatgtctgaacatacaaggacacagtcgatgttatgtaacctcta 369
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 593 gtaggcattaagataaatgtctgaaaatacaaggacacagtcgatgttatgtaacctcta 534

                                                                       
Query: 370 attggatgattcaacagaatctatatgaacaggctagacaaatatatgagtcacgcaggc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 attggatgattcaacagaatctatatgaacaggctagacaaatatatgagtcacgcaggc 474

                                                               
Query: 430 cacctgactgataagaaaaacggataacaataaaacagcccaagaggaaagg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacctgactgataagaaaaacggataacaataaaacagcccaagaggaaagg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 884
Length adjustment: 10
Effective length of query: 471
Effective length of database: 874
Effective search space:   411654
Effective search space used:   411654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)