AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGGTATATCAAGATATACAGGAATATTGAAGTTAACATCTTAGAAA
ACCTTCACTGTCATATTGGCTATGTTCTGCTTCCAGATGTTGGATCTTTT
TCTTTCTATGGACACTCCTAATTTTTTTCTCACAGTAGCTCATGGAGTAG
GAAAAATTTCTCCAGGGACAAAATGAAGCTAAAAAGTAAGTTCTTTTGCT
AAGTTCACGTGTATGAGGGTCAATACTAATTAATTTAATTCTAATACTCT
TCCCTGCCCCTCTAATATTTTTTTGAGACTCATGTTAAGGAAGTAAATCT
GATGAATGGTCAAGGTTTACTGTGCCATATAAAACAGATTGGGGAATGCT
GTGGGTCCATTCAGTCCTCATAGTTGAGCCTCAAACCAGATACTAAAGTT
TTCGGGGAATTCTGGCATACTTCTGTAGGCAAAACAACTCTTGGTTTGGG
TTACAGGGTATTTAATATGGTTTGTATGTGAAGCATCACCATAATTGATT
AATCTTTATCCCAATTTGAAAGGAGGATAATTACAAATAGGATTGCTAAA
TATGCCAATATGAAGTCTGATATCACAGGCAAAAAGAGAGACGATACTAT
ATTGCCAGAACTATTCCACATCATGACCATAGCTGCAACCAATTCTTTGG
AGTCATGGCAAATAACATTCTCCTTTGTTACTCCTCAGTAGTCCCTGGGT
ATATCATCAAGTCACACCAGAG

ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGTATCCCATTTTTA
TTGTATTTTTTTTTCCTTCGAGACAGGGTTTATCTGTATAGCCCTGGCTG
TCCTGAAACTCACTTTATAGACCAGGCTGGCTTTGAACTCAGAAATCCAC
CTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCCTGTGCCACCACGCCC
GGCTGTATCCCATTTTTATAATTGGGCTATTTGGTTTTCTGGAATCTAAC
TTCTTGAGTTCTTTATATATTGGATATTAGCCCTCTATCAGATGTAGGGT
TGGTAAAGATCTTTTCTCAATCTGTAGGTTGCCAGACAAACATCAATCTT
AAAGGCTGAATAGCATTCTATATTGTATATATGACAATTTTTATTATTCA
TTTATATGTTGATGGAAACTTTGGCTGATTCCATATCTTTAAAAGAATTC
CATATTTTGACTATGGTGTAGAATGCTGCACTTAACACAGGAGAGCAGAC
AGCTCTTTGATATATACTAATATAATCCCCTTTGGATACACACCTAGACA
GAGGATCATGTATTTTAAGTGACTCAGAGTCATCTGTTGTTTTTTTGTTT
GTTTGTTTGTTTGTTTTGTTTTTTCTTCAGTTACTCTAACAAGGAGTTTG
TCTACTTTGTTTTCCTGGGAAATCAATTTCATTGATCCCTTAAATTTGTG
TTTAGCATCTATTTCTTTACCCC

Query= MSMg01no479_m20.b1 MSMg01no479_m20.b1 CHROMAT_FILE:
MSMg01no479_m20.b1 PHD_FILE: MSMg01no479_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:55 2005
         (639 letters)



>mm_chr4_110796370_110797408
          Length = 1039

 Score = 1168 bits (604), Expect = 0.0
 Identities = 630/644 (97%), Gaps = 10/644 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaggaatattgaagttaacatcttagaaaaccttcactgtcatattggctatgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaggaatattgaagttaacatcttagaaaaccttcactgtcatattggctatgttctg 260

                                                                       
Query: 61  cttccagatgttggatctttttctttctatggacactcctaatttttttctcacagtagc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cttccagatgttggatctttttctttatatggacactcctaatttttttctcacagtagc 320

                                                                       
Query: 121 tcatggagtaggaaaaatttctccagggacaaaatgaagctaaaaagtaagttcttttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggagtaggaaaaatttctccagggacaaaatgaagctaaaaagtaagttcttttgc 380

                                                                       
Query: 181 taagttcacgtgtatgagggtcaatactaattaatttaattctaatactcttccctgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagttcacgtgtatgagggtcaatactaattaatttaattctaatactcttccctgccc 440

                                                                       
Query: 241 ctctaata-----tttttttgagactcatgttaaggaagtaaatctgatgaatggtcaag 295
           ||||||||     ||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaatagcacatt-----gagactcatgttaaggaagtaaatctgatgaatggtcaag 495

                                                                       
Query: 296 gtttactgtgccatataaaacagattggggaatgctgtgggtccattcagtcctcatagt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtttactgtgccatataaaacagattggggaatgctgtgggtccattcagtcctcatagt 555

                                                                       
Query: 356 tgagcctcaaaccagatactaaagttttcggggaattctggcatacttctgtaggcaaaa 415
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 tgagcctcaaaccagatactaaagttttgggggaattctggcatacttctgtaggcaaaa 615

                                                                       
Query: 416 caactcttggtttgggttacagggtatttaatatggtttgtatgtgaagcatcaccataa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caactcttggtttgggttacagggtatttaatatggtttgtatgtgaagcatcaccataa 675

                                                                       
Query: 476 ttgattaatctttatcccaatttgaaaggaggataattacaaataggattgctaaatatg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttgattaatctttatcccaatttgaaaggaggataattacaaataggattgctaaatatg 735

                                                                       
Query: 536 ccaatatgaagtctgatatcacaggcaaaaagagagacgatactatattgccagaactat 595
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccaagatgaagactgatatcacaggcaaaaagagagacgatactatattgccagaactat 795

                                                       
Query: 596 tccacatcatgaccatagctgcaaccaattctttggagtcatgg 639
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tccacatcatgaccatagctgcaaccaattctttggagtcatgg 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)