BAC Information

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BAC

Clone NameMSMg01-480B11
Chromosome4 (Build37)
Map Location 96,932,682 - 96,933,000
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480B11.T7 (MSMg01no480_b11.b1)MSMg01-480B11.TJ (MSMg01no480_b11.g1)
ACCAG560815AG560816
length732719
length of high quality
(start - end)
540 (75 - 614)319 (325 - 643)
definitionCHROMAT_FILE: MSMg01no480_b11.b1 PHD_FILE: MSMg01no480_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005CHROMAT_FILE: MSMg01no480_b11.g1 PHD_FILE: MSMg01no480_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGC
GGAATTCTCAACAGTTGCATCTCAAATGGCTGAGAAACATGTAAAGAAAT
GTTCAATATCCTTAGTCATCAGGGCAAATGCAAATCAAAACAACCCTGAG
ATCCCACCTTACACCAATCAGAATGGCTAAGATCAAAAACTCAAGTGACA
GCACATGCTGGCAAAGATGTGAAGAAAGGAGAACATTTGTCCATTGCTAG
TGGGATTGCAACCCCTCTGGAAATCAACCTCATAGTTCCTCAGAAAATTG
GAAATAGTCCTACCTGAAGATTCATTTATACCACTCCTTGACATATACCC
AAAAGATCCTCCACCATATCACAAGGACCCATGCTGCACTTGTTCATAGC
AGACTTATTTATAATAGTCAGAAACAGAAAGCAACCCCAGATGTCCCTCA
ATTGAAGAATGGATACAGAAAATGTGGCACATTTACATAAAAAAATACTA
GTTAAAACAAGGACATAGTGAATTTCACAAGCAAATGGATGGAACTAGAA
AATATCTTGAATGAGGTAACCCAGACCCCAAAAGACTTACATGATATGTA
TTCACTGAGAAGTGGAAATTAGCCAAAAAGTACAGAATACTCATGATACA
CCCCGGAGACCCTAAGAAGTTAAATAAGGAAGGTCCNAGTGAGGATACTT
AAAGTCCTGTGGAATGTCAGATTCATGATTAT
NACGATGAAGTGNGAGGCCTGGCGGCCGCCTGGTTTCAAACACAGGGGTG
AACTATAGAAGGTTTCAAAAAATCGCTGTGTTAGACAATTCACCATAGTT
TCCCATTAGCCCATGTTGCTTCACAAGCATCCAAGGAATCTGTTTGTATC
AAAGACAGCTGGAAACTTCCTTCCTGACCCAAAGGTAGGTCCAGGGTGTG
ACTCAATATGATATTTAGTAGATAAGTTTGCCCTGCCCTTTTCCCTAATG
TTATTGTTACCACATTTTTCTTCCTTAGATACATATGTCTAGCTTCTGCT
CTTAGTCAAATCCCTTGATGGNTGTGATTCCTAGTTTCTGACGGGCTGTC
CCATTTCCTGGAGCTGTTCGTCACAGGTACTAGTGGCTCAGAGAAATGGA
TTCGCTCCATCCTTTCTATTGTGATGTGATAAGGTGGATTTTGGAGTCGC
TAAGATCCCTATCAGATGATGATTGTGCCAGTTGTACGACTTGGAAAGCT
ACAGAACCTCTTTGTATGGGGAAATGCATGCTGAGACTCTACCTTTCTCA
CAACTCTGTTCCCAAAAGGAAGAATTGGCAACAGGATGAATGTAAAAGTG
AAGAAAGTGAAATAATCCATGGTCAACATTAATATATTTAAGTAACTAAC
ACAGACAGCTAAACTAGGTAAGCTAGGATAGAATCCAGAGATTCCCAATG
CTTAGCATCAAATTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_b11.g1 MSMg01no480_b11.g1 CHROMAT_FILE:
MSMg01no480_b11.g1 PHD_FILE: MSMg01no480_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:18 2005
         (319 letters)



>mm_chr4_96932482_96933200
          Length = 719

 Score =  532 bits (275), Expect = e-155
 Identities = 308/319 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattcctagtttctgacgggctgtcccatttcctggagctgttcgtcacaggtactagt 60
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgattcctagtttctgatgggctgtcccatttcctggagctgttcatcacaggtactagt 260

                                                                       
Query: 61  ggctcagagaaatggattcgctccatcctttctattgtgatgtgataaggtggattttgg 120
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcagagaaatggatttactccatcctttctattgtgatgtgataaggtggattttgg 320

                                                                       
Query: 121 agtcgctaagatccctatcagatgatgattgtgccagttgtacgacttggaaagctacag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctctaagatccctatcagatgatgattgtgccagttgtacgacttggaaagctacag 380

                                                                       
Query: 181 aacctctttgtatggggaaatgcatgctgagactctacctttctcacaactctgttccca 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctctttgtatgaggaaatgcatgctgagactctacctttctcacaactctgttccca 440

                                                                       
Query: 241 aaaggaagaattggcaacaggatgaatgtaaaagtgaagaaagtgaaataatccatggtc 300
           |||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 441 aaaggaagaattggcagcaggatgaatgtagaagtgaagaaggtgaaataattcatggtc 500

                              
Query: 301 aacattaatatatttaagt 319
           |||||||||| ||||||||
Sbjct: 501 aacattaataaatttaagt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)