Query= MSMg01no480_d11.b1 MSMg01no480_d11.b1 CHROMAT_FILE:
MSMg01no480_d11.b1 PHD_FILE: MSMg01no480_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:27 2005
(598 letters)
>mm_chr4_100655612_100656609
Length = 998
Score = 696 bits (360), Expect = 0.0
Identities = 363/364 (99%)
Strand = Plus / Minus
Query: 235 tgtggtgacccccctaaccataaaattaatttcgtagctacttcataactataatttgct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tgtggtgacccccctaaccataaaattaatttcgtagctacttcataactataatttgct 939
Query: 295 actgttataaattgtaatgtaaatatttgatatgcaagatacctgatatgctacccctgt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 actgttataaattgtaatgtaaatatttgatatgcaagatacctgatatgctacccctgt 879
Query: 355 gaaaaggtcattttgagtccccaaaggggtcgcaacccacaggttgaaaaccactgctct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaaaaggtcattttgagtccccaaaggggtcgcaacccacaggttgaaaaccactgctct 819
Query: 415 cgggacccaaaactaatacagttggtggattaatcaaaccagagtaccaaccctgtgacc 474
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cgggacccataactaatacagttggtggattaatcaaaccagagtaccaaccctgtgacc 759
Query: 475 ttcagacagtccctgtgccatcctggccgtttgtcctacgattatcacagtgagagtcat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttcagacagtccctgtgccatcctggccgtttgtcctacgattatcacagtgagagtcat 699
Query: 535 actaaagtccttccctcagcccacggttctgtgactccaaggcacatgggcattattctg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 actaaagtccttccctcagcccacggttctgtgactccaaggcacatgggcattattctg 639
Query: 595 tcca 598
||||
Sbjct: 638 tcca 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_d11.g1 MSMg01no480_d11.g1 CHROMAT_FILE:
MSMg01no480_d11.g1 PHD_FILE: MSMg01no480_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:27 2005
(271 letters)
>mm_chr4_100467646_100468316
Length = 671
Score = 422 bits (218), Expect = e-122
Identities = 254/266 (95%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 8 tgttacatagtt-gactgttgcatagtt-gactgttgcatagttggctgttgcatagtta 65
|||| ||||||| | ||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 208 tgttgcatagttag-ctgttgcatagttag-ctgttgcatagttagctgttgcatagtta 265
Query: 66 gttgttgcatagttagctgttacatagttagctgttacatagttagttgttacatagtta 125
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgttacatagttagctgttacatagttagctgttacatagttagttgttacatagtta 325
Query: 126 gctgttacatagttgttacatggctcaatgggccatgctggctgccaaacgtcacttccc 185
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 326 gctgttacatagttgttacatggctcaatggaccatgctggctgccaaatgtcacttccc 385
Query: 186 agtcacctcctccttagactcagaccaccctacctcagcctctgttcactataataacta 245
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 agtcacctcctccttagacacagaccaccctacctcagtctctgttcactataataacta 445
Query: 246 ttaggggctatttctttcctggcaca 271
||||||||||||||||||||||||||
Sbjct: 446 ttaggggctatttctttcctggcaca 471
Score = 128 bits (66), Expect = 4e-34
Identities = 93/106 (87%), Gaps = 8/106 (7%)
Strand = Plus / Plus
Query: 49 tggctgttgcatagttagttgttgcat----agttagctgttacatagttagctgttaca 104
|||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 42 tggctgttacatagttagctgttacattgttagttagctgttacatagttagctgttaca 101
Query: 105 tagttagttgttacatagttagctgttacatag----ttgttacat 146
|||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 102 cagttagctgttacatagttagctgttacatagctgtttgttacat 147
Score = 108 bits (56), Expect = 3e-28
Identities = 107/128 (83%), Gaps = 12/128 (9%)
Strand = Plus / Plus
Query: 22 ctgttgcatagtt-gactgttgca----tagttggctgttgcatagttagttgttgcata 76
||||| ||||||| | ||||| || ||||| |||||| ||||||||| |||| || |
Sbjct: 45 ctgttacatagttag-ctgttacattgttagttagctgttacatagttagctgttacaca 103
Query: 77 gttagctgttacatagttagctgttacatagttagtt-gttacatagttagctgtt---- 131
||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||
Sbjct: 104 gttagctgttacatagttagctgttacatagct-gtttgttacatagttagttgtttgtt 162
Query: 132 acatagtt 139
||||||||
Sbjct: 163 acatagtt 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 3
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
