Query= MSMg01no481_b05.b1 MSMg01no481_b05.b1 CHROMAT_FILE:
MSMg01no481_b05.b1 PHD_FILE: MSMg01no481_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:34 2005
(628 letters)
>mm_chr4_5587402_5588429
Length = 1028
Score = 1160 bits (600), Expect = 0.0
Identities = 618/624 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggcttcctgcacctttttgttctctgtggttacagactgctcacccactttac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaattcaggcttcctgcacctttttgttctctgtggttacagactgctcacccactttac 169
Query: 65 cttctccaccaattccatgataaactcctcttaaaacataggcacagctgctaagaatgt 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 170 cttctccaccaattccatgataagctcctcttaaaacataggcacagctgctaagaatgt 229
Query: 125 caagccaaagtaccttgataccctataggtcattcagattggcttgcagccttagctatc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 caagccaaagtaccttgataccctataggtcattcagattggcttgcagccttagctatt 289
Query: 185 atgtacctgtggcatgatcagtgtgcctaactaattaagtgaatgtttgtaaatcactca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgtacctgtggcatgatcagtgtgcctaactaattaagtgaatgtttgtaaatcactca 349
Query: 245 gggaaaataatggttttaccaatgtgttgaaatgggctaattaggtcctcctaagtctgg 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 350 gggaaaataatggttttaccaatgtgttgaaatgggctgattaggtcctcctaagtctgg 409
Query: 305 gtcctacttaggacattctggagtgtcttccagcacctccctcctaccagcacatctatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtcctacttaggacattctggagtgtcttccagcacctccctcctaccagcacatctatc 469
Query: 365 ttgaactcagctgatggctgcatcttacacagatgccctcagttgaggctgcatcttaca 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttgaactcagctgatggctgtatcttacacagatgccctcagttgaggctgcatcttaca 529
Query: 425 cagctgcccttagttgaggctgcatcttaaacagctgtcctcaggtggtggctgcattgt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 530 cagctgcccttagttgaggctgcatcttaaacagctgtcctcaggtggtggctgcatttt 589
Query: 485 acagagctgctctcagctgatgggtatatcttacacagctgctctcagatgatggctgta 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acagagctgctgtcagctgatgggtatatcttacacagctgctctcagatgatggctgta 649
Query: 545 tcttacacagctgccctcagttagtggctgcattctacacaactgccctcagttggtagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcttacacagctgccctcagttagtggctgcattctacacaactgccctcagttggtagc 709
Query: 605 tgcattgtacagatctgctctcag 628
||||||||||||||||||||||||
Sbjct: 710 tgcattgtacagatctgctctcag 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_b05.g1 MSMg01no481_b05.g1 CHROMAT_FILE:
MSMg01no481_b05.g1 PHD_FILE: MSMg01no481_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:35 2005
(620 letters)
>mm_chr4_5734375_5735394
Length = 1020
Score = 1137 bits (588), Expect = 0.0
Identities = 612/620 (98%)
Strand = Plus / Minus
Query: 1 tcaacagatggaagcagcccataaaacaagagaaggggtcttcaggggagccagccggca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tcaacagatggaagcagcccataaaacaagagaaggggtcttcaggggagccagccggcg 761
Query: 61 ctacagcagatgcctgagcactgagctgccctgagaaatctgaaacactgggcaagacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ctacagcagatgcctgagcactgagctgccctgagaaatctgaaacactgggcaagacac 701
Query: 121 attgggcctttgtccagagctagcaaaacagggccttcccatccccaacccccactacct 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 attgggcctttgtccacagctagcaaaacagggccttcccatccccaacccccactacct 641
Query: 181 ccaccctctcccagccacaggcaggagccatacacttcccaaccatgtgcatttgtcagc 240
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 640 ccagcctctcccagccacaggcaggagccatacacttcccaatcatgtgcatttgtcagc 581
Query: 241 tcagtaggggaaaataaaagctttcattgaaatagctacaggcctagggcgttaccaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcagtaggggaaaataaaagctttcattgaaatagctacaggcctagggcgttaccaagg 521
Query: 301 catgtatttccgcacttcccaccaaattaaaatgctcagtaactccaatgatggcctaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 catgtatttccgcacttcccaccaaattaaaatgctcagtaactccaatgatggcctaga 461
Query: 361 acttgcccagagagtgcaaggaccaggacatcgtccagcctggcttagatatactcacgc 420
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acttgccctgagagtgcaagggccaggacatcgtccagcctggcttagatatactcacgc 401
Query: 421 aaggagctcaccttgctgctgtaatccctccattatgtacaagaagaaagcactagaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaggagctcaccttgctgctgtaatccctccattatgtacaagaagaaagcactagaaac 341
Query: 481 atttatgtgagcctaccaatccttgaaaattggtgactcatttatccttgagaaggcaaa 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atttatgtgagcttaccaatccttgaaaattggtgactcatttatccttgagaaggcaaa 281
Query: 541 gaatgcacttaaggagggtgtagtgaggtcttctcctgcttcttgcaggagaacttccag 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 280 gaatgcacttaaggagggtgtagtgaggtcttctcctgcttcttgcaggagaccttccag 221
Query: 601 atattatcaattgaaagcca 620
||||||||||||||||||||
Sbjct: 220 atattatcaattgaaagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
