XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTC
TTACCCTCTCTGTGAATAATTAGACTACATTCTCTAATACTATTTTGGCT
AAAAGCACTGTGTAAAATTGTCAGTTAATTCATCACATCTACTTTTGCAT
GACTATGGTCATGTTCATATTAGACAGTCGTGCTGTTCAGCTCATGTCAG
ACAGTCATGCTGGTGTCATATGAAATGCTATAATCACTACTCAGGATCAA
GTTAGTTTTGTATAATTTCACTAACATTTTGATTTGTCATTAGAAATCCT
CATTTCTGTTCAGGTGTGGCATCTAACAACTGTAATTCCAGTATTTGAGA
GGCTGAGACCGGAGGATATCAGACAATTTAAGGCTTCCTTGGGCAAGCCT
GGATTACACAGGGAGACTTTGTTTCAAATATCAAAATAAAACAAACAAAA
TAAATCAAAAAACAAATCCTATTTTCTCCATCAGTGTTGATGTGAATATG
AATGCAATTACATACTTTGTTTAAGGGATAGAAGTCACACGTCAGAAAGA
ATGTAAGAAGAGTGTTGCACACTGGGCATATATCCAGAAGATGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATTTACACAATGGAATACTACCCAGCTATTAAAAA
AATGAATTTATGAAATTCCTAGGC

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
TTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGACGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAAACTGGACATAGTATTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACA
TTCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATT
AGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACA
TGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTT
AGATTTGGGACAAAACACCCATGG

Query= MSMg01no481_b08.b1 MSMg01no481_b08.b1 CHROMAT_FILE:
MSMg01no481_b08.b1 PHD_FILE: MSMg01no481_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:35 2005
         (669 letters)



>mm_chr4_89404279_89405347
          Length = 1069

 Score = 1195 bits (618), Expect = 0.0
 Identities = 654/666 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttaccctctctgtgaataattagactacattctctaatactattttggc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattctttcttaccctctctgtgaataattagactacattctctaatcctattttggc 263

                                                                       
Query: 64  taaaagcactgtgtaaaattgtcagttaattcatcacatctacttttgcatgactatggt 123
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 264 taaaagcactgtgtaaaattgtcagttaattcatcacatctactctggcatgactatggt 323

                                                                       
Query: 124 catgttcatattagacagtcgtgctgttcagctcatgtcagacagtcatgctggtgtcat 183
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 catgttcatgttagacagtcgtgctgttcagctcatgtcagacagtcatgttggtgtcat 383

                                                                       
Query: 184 atgaaatgctataatcactactcaggatcaagttagttttgtataatttcactaacattt 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 atgaaatgctataatcactactcaggatcaagttagttttgtacaatttcactaacattt 443

                                                                       
Query: 244 tgatttgtcattagaaatcctcatttctgttcaggtgtggcatctaacaactgtaattcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatttgtcattagaaatcctcatttctgttcaggtgtggcatctaacaactgtaattcc 503

                                                                       
Query: 304 agtatttgagaggctgagaccggaggatatcagacaatttaaggcttccttgggcaagcc 363
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 504 agtatttgagaggctgagaccagaggatataagacaatttaaggcttccttgggcaagcc 563

                                                                       
Query: 364 tggattacacagggagactttgtttcaaatatcaaaataaaacaaacaaaataaatcaaa 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggactacacagggagactttgtttcaaatatcaaaataaaacaaacaaaataaatcaaa 623

                                                                       
Query: 424 aaacaaatcctattttctccatcagtgttgatgtgaatatgaatgcaattacatactttg 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 aaacaaatcctattttctccatcagtgttgatgtgaatatgaatgcaattacgtactttg 683

                                                                       
Query: 484 tttaagggatagaagtcacacgtcagaaagaatgtaagaagagtgttgcacactgggcat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttaagggatagaagtcacacgtcagaaagaatgtaagaagagtgttgcacactgggcat 743

                                                                       
Query: 544 atatccagaagatgtcccaaccggtaagaaggacacatgctccactatgttcatagcagc 603
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatccagaagatgtcccaaccagtaagaaggacacatgctccactatgttcatagcagc 803

                                                                       
Query: 604 cttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggat 663
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 cttatttataatagccagaagctggaaagaacccagatacccctcaacagaggaatggat 863

                 
Query: 664 acagaa 669
           ||||||
Sbjct: 864 acagaa 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)