NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTTTCCGGGACCCATATGAGATATGAATGCATTTTG
TGTTGTTGAGAGTGCTAATTTTACTCCTGACAAATTAACATTATCACTTA
GTACTAGTTTATTGCTAATAATTCATTTAGTTTTGAATATTTTTGTGATA
TTAGATATTTTAATATCTAATTTGATATTTATATATTATAAAATTATTAA
AATAAATTCAGTAGGATCCAATACAGACATTGTTTAATTTAGAATCTCTG
TTCATAAATAATCATTATACTTAATAATTATGCATGTAAGTAAACATCAT
CTAATTAAGCATGCAATTTGGGGCATATCAATAACTTTTGGAAAAATACA
CTATATAATTTCATAGGATTTATGTTCTTTCTTCTTGTTCACCCTTTTTT
TTTTTTTTGTATTAAAGTATAAATCCTTCTGGACCATTTTGCCCTCACTG
GTCCCATAGCAAATCTCCTGTGCATTCTGGACAACTTTCCTCCCTTTCTT
TTGTTCTTCATGGAAAAAAATAATAATTTGCTAGCTTCCCAGTTCCTTAA
GGAAACAGATGCCTTTTATTTTCAAAATTGCAATTACTAGGTTAAAATAT
AAAGATGTTTGGCTCTATAAGTATTTTGTCTCCTGTCTTTTTTTGGCTAA
GACAAAATAATTGTCTGAGTTCATATGTAATCTGAGGGAGGTCTTTCTAA
ATTATAACCTTCTGTN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAGATCAATAATTACTA
CACTGTACAAAACTTGAAGCCAAATTAATCATAGCCATCAATATAAAACT
AGATATACTGAAAATAGTGGAAGAGGAAGTGGGAAATCATCTAGAACTCA
TTGGCACAAAAGAAGACTTTCTGACCAGACAAGTACTAGCACAAACACTA
AGATCAAAAATTAATAAATGGAATCTCATGAAACTGAACATATTAAGAGC
AGCCAAGGTCGCTATCATTTGGACAAAGAAGCAGACTGCAGAATGGGAAA
TAATTTTTTACTAATTACACATTCGATAAATGGTTAATATCCAAAATATA
TAAATACCTCAAAAAGTAGATATTAAGGAAACAAATAACCCAAGTTTAAA
AAGTTGTAAAGAACTAAATAGAAAAATTTCAACAGAGGGAACTTGAAACA
TTGAGAAACACTGAAAAGAAATGTCCATCATCCTTAATAAGAAAAATGCA
TATCAAAATTATATTGAGATTTTTATCTTAAACCTTTCAGAATGACTATG
ATTTATGAAAAAGTAGTTCTATTTTGGAGAAGAAATGGAGAATCCTCAGC
CATTTTGAAGGGACCGCAAAGTTAAACAGTCATTATCGAAATCAGTCTGG
TGGTTCCTTTGGAAGACTGGAACTGATCTACCTCAAGATGCAGTTGTAAC
A

Query= MSMg01no483_k20.b1 MSMg01no483_k20.b1 CHROMAT_FILE:
MSMg01no483_k20.b1 PHD_FILE: MSMg01no483_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:58 2005
         (550 letters)



>mm_chr4_18355840_18356786
          Length = 947

 Score =  980 bits (507), Expect = 0.0
 Identities = 533/543 (98%), Gaps = 4/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcattgtttccgggacccatatgagatatgaatgcattttgtgttgttgagagtgctaat 68
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 947 tcattgtttctgggacccatatgagatatgcatgcattttgtgttgttgagagtgctaat 888

                                                                       
Query: 69  tttactcctgacaaattaacattatcacttagtactagtttattgctaataattcattta 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 887 tttactcctgacaaattaacattatcacttagtactagtttattgctaataatgcattta 828

                                                                       
Query: 129 gttttgaata-tttttgtgatattagatattttaatatctaatttgatatttatatatta 187
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 827 gttttgaatattttttgtgatattagatatgttaatatctaatttgatatttatatatta 768

                                                                       
Query: 188 taaaattattaaaataaattcagtaggatccaatacagacattgtttaatttagaatctc 247
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 767 taaaattattaaaataaattcagtaggatccaatacagacattgtttaatttaggatctc 708

                                                                       
Query: 248 tgttcataaataatcattatacttaataattatgcatgtaagtaaacatcatctaattaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgttcataaataatcattatacttaataattatgcatgtaagtaaacatcatctaattaa 648

                                                                       
Query: 308 gcatgcaatttggggcatatcaataacttttggaaaaatacactatataatttcatagga 367
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 647 gcatgcaatttggggcatatcaataacttttggacaaatacactatataatttcatagga 588

                                                                       
Query: 368 tttatgttctttcttcttgttcacccttttttttttttttgtattaaagtataaatcctt 427
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 587 tttatgttctttcttcttgttcaccc---tttttttttttgtattaaagtataaatcctt 531

                                                                       
Query: 428 ctggaccattttgccctcactggtcccatagcaaatctcctgtgcattctggacaacttt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctggaccattttgccctcactggtcccatagcaaatctcctgtgcattctggacaacttt 471

                                                                       
Query: 488 cctccctttcttttgttcttcatggaaaaaaataataatttgctagcttcccagttcctt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cctccctttcttttgttcttcatggaaaaaaataataatttgctagcttcccagttcctt 411

              
Query: 548 aag 550
           |||
Sbjct: 410 aag 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 947
Length adjustment: 10
Effective length of query: 540
Effective length of database: 937
Effective search space:   505980
Effective search space used:   505980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)