Query= MSMg01no484_f08.b1 MSMg01no484_f08.b1 CHROMAT_FILE:
MSMg01no484_f08.b1 PHD_FILE: MSMg01no484_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:51 2005
(619 letters)
>mm_chr4_79650768_79651787
Length = 1020
Score = 721 bits (373), Expect = 0.0
Identities = 432/461 (93%), Gaps = 16/461 (3%)
Strand = Plus / Plus
Query: 172 tgattattctcctcagcttcactcacatccatgccattcatatcatcctcctcataaatt 231
|||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 357 tgattattctccccagcttcgctcccatccctgccattcatatcatcctcctcataagtt 416
Query: 232 ctccataattttgaaatctttgatatcagagacattgctatgctgtgaaatgacatcggt 291
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 417 ctccataattttgaaaactttgatttcagagacattgctatgctgtgaaatgacatcggt 476
Query: 292 cttaaaagatg---------------ctatgatgattctgaaaaaa-tgaaaaatgttat 335
|||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct: 477 cttaaatgatgatgattctgaatcatctatgatgattctgaaaaaaatgaaaaatgttat 536
Query: 336 catttatactgtaacagaaatgaaactataatgttgcaaaaggtccaaatgaaaatatta 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 catttatactgtaacagaaatgaaactataatgttgcaaaaggtccaaatgaaaatatta 596
Query: 396 aatgctgactactgattttaaagcatttgaaaatacaatagcagaggaactgatacagaa 455
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 597 aatgctgactactgattttaaagcatttgaaaatacaatagcagaggaacggatacagaa 656
Query: 456 aatgtggtacatttacacaatggaatactactgaactattaaaatgaatgaatttatgaa 515
|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 657 aatgtggtacatttacacaatggagtactattcaactattaaaatgaatgaatttatgaa 716
Query: 516 attcctaggcaaatggatggatctggagggcatcatcctgagtgaggtaacccaataaca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 attcctaggcaaatggatggatctggagggcatcatcctgagtgaggtaacccaataaca 776
Query: 576 atagaactcacatgatatatactcactgataagtggatatt 616
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 777 atagaactcacatgatgtatactcactgataagtggatatt 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_f08.g1 MSMg01no484_f08.g1 CHROMAT_FILE:
MSMg01no484_f08.g1 PHD_FILE: MSMg01no484_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:51 2005
(663 letters)
>mm_chr4_79791078_79792140
Length = 1063
Score = 1243 bits (643), Expect = 0.0
Identities = 658/663 (99%)
Strand = Plus / Minus
Query: 1 cagaagacacaattaagcaagcaataccatttttcaggaccttggtaaactaattaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagaagacacaattaagcaagcaataccatttttcaggaccttggtaaactaattaagaa 804
Query: 61 tgtaatagaaaggaaatttatgtattatcttacctctttaggatacattttaatattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgtaatagaaaggaaatttatgtattatcttacctctttaggatacattttaatattatg 744
Query: 121 acactgaggtttgagaactatctgtccctggtacaatgggatttttcaatgttcttatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acactgaggtttgagaactatctgtccctggtacaatgggatttttcaatgttcttatct 684
Query: 181 aattttctttgatttataatgacaaaaggaaaatttttcttttaaaagccaaactgttga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 aattttctttgatttataatgacaaaaggaaaattgttcttttaaaagccaaactgttga 624
Query: 241 tcctttttcagccagtttagtgtcattataggtgagagtctagagtttgagataatagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctttttcagccagtttagtgtcattataggtgagagtctagagtttgagataatagct 564
Query: 301 ttaacattttcacatttttattgagatttgtctttgtaagtacagattttaaattaagaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 ttaacattttcacatttttattgagatttgtctttggaagtacagattttaaattaagaa 504
Query: 361 tttccaaatatgatatgaaaaataaccagataaactgtctaacataaactgacaaaggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttccaaatatgatatgaaaaataaccagataaactgtctaacataaactgacaaaggtg 444
Query: 421 tcatcgaaatgatagctttaaatataagctacaaaatctatttgttaagtctatttttat 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcatcgaaatgatagctctaaatataagctacaaaatctatttgttaagtctatttttat 384
Query: 481 ttatgactatgagttaattactgtctacatgtgtttataaatgtataatgtctatgtaat 540
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 ttatgactatgagctaattactgtctacatgtgtttataaatgtctaatgtctatgtaat 324
Query: 541 attctattggcttataagtgagtgctcaagtaaattaaatcagccacaatttatttaagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attctattggcttataagtgagtgctcaagtaaattaaatcagccacaatttatttaagt 264
Query: 601 acataatgcaataaaagttttaagaaataaaaatacttcagtttcagtaacccaaataga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acataatgcaataaaagttttaagaaataaaaatacttcagtttcagtaacccaaataga 204
Query: 661 cta 663
|||
Sbjct: 203 cta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
