Query= MSMg01no484_m14.b1 MSMg01no484_m14.b1 CHROMAT_FILE:
MSMg01no484_m14.b1 PHD_FILE: MSMg01no484_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:29 2005
(358 letters)
>mm_chr4_15071184_15071936
Length = 753
Score = 545 bits (282), Expect = e-159
Identities = 322/338 (95%), Gaps = 5/338 (1%)
Strand = Plus / Minus
Query: 20 aaacaaggaatttcatttatgggtatgaaagaatatctttggaggtaataaggaagctgt 79
||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||
Sbjct: 552 aaacaaggaatttcatttatgggtatgaaagtatatctttggagataataaagaagccgt 493
Query: 80 ccgtaatctgtaaattatagtgaagtacagtgttcttcatatttaagcttcctccctgga 139
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccgtaatccgtaaattatagtgaagtacagtgttcttcatatttaagcttcctccctgga 433
Query: 140 catatttaaatgtatttactatgcctagtgcgggcagctgttaagattagcaggctgtag 199
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 432 catatttaaatgtatttactatgcctagtgcaggcagctgttaagattagcaggctgtag 373
Query: 200 taacactacatactgagctccattctcatctgcagtgcttctttttttttttttttaaat 259
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 taacactacatactgagctccattctcatctgcagtgcttc-----ttttttttttaaat 318
Query: 260 tgtgagctcgtatgcaaaatttgcaggagtggtaattctatccatatttaattacaggag 319
|||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 tgtgagcttggaggcaaaatttgcaggagtggcaattctatccatatttaattacaggag 258
Query: 320 tctaataacatgagctactgtcttaatttcatctctga 357
|||||||||||||||||||||||||||||||||||||
Sbjct: 257 actaataacatgagctactgtcttaatttcatctctga 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 753
Length adjustment: 9
Effective length of query: 349
Effective length of database: 744
Effective search space: 259656
Effective search space used: 259656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_m14.g1 MSMg01no484_m14.g1 CHROMAT_FILE:
MSMg01no484_m14.g1 PHD_FILE: MSMg01no484_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:29 2005
(632 letters)
>mm_chr4_14996254_14997285
Length = 1032
Score = 1160 bits (600), Expect = 0.0
Identities = 624/632 (98%)
Strand = Plus / Plus
Query: 1 ttaatatcatggaaaatatttatattaaaaattgtataaacataaaccagaagtaaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatatcatggaaaatatttatattaaaaattgtataaacataaaccagaagtaaattg 260
Query: 61 gccatatccgtatgtattggtcaaaatttattttttttaatggcttgaaagaagtgaatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatatccgtatgtattggtcaaaatttattttttttaatggcttgaaagaagtgaatg 320
Query: 121 aatacggtaacagtgagcccacactgttcctgtatgtcagaacttcagagacgcttgttt 180
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 321 aatatggtaacagtgagcccacactgttcctgtatgtcagaacttcatagaggcttgttt 380
Query: 181 cttcctttgtacctttctaaaatattgttgtctattaccattacctttccccttgaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctttgtacctttctaaaatattgttgtctattaccattacctttccccttgaatgt 440
Query: 241 aaatgatgcattttgtgatttgactgaaagaagtcaggaaaagtaaggtattaagggtaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataatgcattttgtgatttgactgaaagaagtcaggaaaagtaaggtattaagggtaa 500
Query: 301 caagtaagctcatattcatagtttctctgtaaatactatgtgcttgccgatgagcctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtaagctcatattcatagtttctctgtaaatactatgtgcttgccgatgagcctact 560
Query: 361 tagtagagatggcattcagtctgtccatttggctttgtccttgatttaacaaactgacat 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtagagatggcatccagtctgtccatttggctttgtccttgatttaacaaactgacat 620
Query: 421 ttaacattctgtgcagaataaacagtggtatacaaggcaatatttcatggcaatcatgta 480
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ttaacattctgtgtagaataaacagtggcatacaaggcaatatttcatggcaatcatgta 680
Query: 481 caaccctgaaggtactggaagttgcactctactgtgttattctgggcactctaaactctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaccctgaaggtactggaagttgcactctactgtgttattctgggcactctaaactctg 740
Query: 541 aggaaaccagctttctgtcttaagaagtacttttgacactcaccagggctctgcagtcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggaaaccagctttctgtcttaagaagtacttttgacactcaccagggctctgcagtcta 800
Query: 601 gtaacttaagatccccagttctcaatttaggt 632
||||||||||||||||||||||||||||||||
Sbjct: 801 gtaacttaagatccccagttctcaatttaggt 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
