NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGCCACAGATGCAAATGAAGCCGCAGCCTAAGAAAAGACT
GCACCCCTGGCTCGAGAGCGCATTCCATTAGTAATTAGAGGAGAAAAACG
ACACCCTCTGGGGAAAAGCACTCAAGTCACTGCCAAGCCAGACACAGAGT
TTCTGGAAGTAACTAGCTGTGCACCTGGCTTCACATGGTCCTCACCCTGT
AGACAAATAGCAGCCAGAGTTCCCTTACTGTGGAAGCTCCATTTCAAAGT
GGCTACTACCCCTTCAAATCGTCACAAAAGCAGGGATTGCTTCCTCTGGT
GCTTCAGCCGGCCCTTTACCCTTCCCTTTTCTCTTTTGCACTCTGCTCTT
GGGAAACACGTTGCAGTGGTATTGAGAATATAATGGTGAGATTAAATTAA
ACAATAATACTGGGAGGACACTGACTAAGGGGAGAAAATTTGCCTTCTGG
ATTGGCTGTAACTCTACTATTGGGAGTAATTTCTACTCCCTCCGGTTTGT
GTGATGGATGTGGGCACCAGCACCAAGTTAAGATTTCAGGGCGGATCACA
GAGACTTGATGTGCTAGGGTTGGGGGATACCCAACTGGCCCCACCTGCTC
AGAGGAGAAGAGAATGGGAGATAGGGGGAGGACTGTGGNNAGGGGAGAGT
GACCAAGATGTAAAGTGAATTAATAAAAAAAACCACTTCCACTACT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCAGCACTGTTTTAACTTGGGTAGA
GTCCAGCTTCCTGTTCTTTGATAGCTTCTCTCTATTTTCTAAGACGTTCT
CATTTGCCAAGACATCACAAAGATCCTTCGGGTGTTTCTTGCAAATGCTG
GNATATCGGCTGGCTGGTGGCTGACCCGTGCAATTCATTTTTGGGAAACA
AACTAACCATGGAGGGTTCCCTTTTTTTAAGGNACGCAAATTACGNNNNN
NNNNNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
GGGGGNNTCCCTNNNNNNTAATGNNNNNGGNNNNTTTTTTGGNNNNNNAA
ATAAATCCCCNNNNNCCCNNNNNNNNNCCNNCCNNCNNAAAGGGGGGGGG
GGGTTTACCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGGGGGGTTGGTGNATANGATGGGGGGNNNCCTGGGGG
GGGGGGNNNNAATGTGTGTTGGGAACTGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNANNNNANTANTTGTTTTTGTGTGGTGGTTGTGTGCATG
ATCTTTTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGAATGGGGGG

Query= MSMg01no485_l06.b1 MSMg01no485_l06.b1 CHROMAT_FILE:
MSMg01no485_l06.b1 PHD_FILE: MSMg01no485_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:45 2005
         (637 letters)



>mm_chr4_82407882_82408917
          Length = 1036

 Score = 1154 bits (597), Expect = 0.0
 Identities = 624/633 (98%), Gaps = 1/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgccacagatgcaaatgaagccgcagcctaagaaaagactgcacccctggct 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattcagtgccacagatggaaatgaagccgcagcctaagaaaagactgcacccctggct 687

                                                                       
Query: 65  cgagagcgcattccattagtaattagaggagaaaaacgacaccctctggggaaaagcact 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 686 cgagagcgcattccattagtaattagaggagaaaaacgacaccctctggggagaagcact 627

                                                                       
Query: 125 caagtcactgccaagccagacacagagtttctggaagtaactagctgtgcacctggcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caagtcactgccaagccagacacagagtttctggaagtaactagctgtgcacctggcttc 567

                                                                       
Query: 185 acatggtcctcaccctgtagacaaatagcagccagagttcccttactgtggaagctccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acatggtcctcaccctgtagacaaatagcagccagagttcccttactgtggaagctccat 507

                                                                       
Query: 245 ttcaaagtggctactaccccttcaaatcgtcacaaaagcagggattgcttcctctggtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcaaagtggctactaccccttcaaatcgtcacaaaagcagggattgcttcctctggtgc 447

                                                                       
Query: 305 ttcagccggccctttacccttcccttttctcttttgcactctgctcttgggaaacacgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 446 ttcagccggccctttacccttcccttttctcttttgcactctgctcttggggaacacatt 387

                                                                       
Query: 365 gcagtggtattgagaatataatggtgagattaaattaaacaataatactgggaggacact 424
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 386 gcagtggtattg-gaatataatggtgagattaaattaaacaatcatactgggaggacact 328

                                                                       
Query: 425 gactaaggggagaaaatttgccttctggattggctgtaactctactattgggagtaattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gactaaggggagaaaatttgccttctggattggctgtaactctactattgggagtaattt 268

                                                                       
Query: 485 ctactccctccggtttgtgtgatggatgtgggcaccagcaccaagttaagatttcagggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctactccctccggtttgtgtgatggatgtgggcaccagcaccaagttaagatttcagggc 208

                                                                       
Query: 545 ggatcacagagacttgatgtgctagggttgggggatacccaactggccccacctgctcag 604
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 207 ggatcacagagacttgatgtgctagggttgggggatacccaagtggccccacctgctcaa 148

                                            
Query: 605 aggagaagagaatgggagatagggggaggactg 637
           |||||||||||||||||||| ||||||||||||
Sbjct: 147 aggagaagagaatgggagatggggggaggactg 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)