BAC Information

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BAC

Clone NameMSMg01-485P09
Chromosome4 (Build37)
Map Location 54,907,242 - 55,080,592
singlet/doubletdoublet
Overlap geneEG666920, Zfp462
Upstream geneLOC100041280, LOC666901, LOC100041303, LOC384018
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485P09.T7 (MSMg01no485_p09.b1)MSMg01-485P09.TJ (MSMg01no485_p09.g1)
ACCAG565280AG565281
length733742
length of high quality
(start - end)		505 (75 - 579)624 (80 - 703)
definitionCHROMAT_FILE: MSMg01no485_p09.b1 PHD_FILE: MSMg01no485_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:07 2005CHROMAT_FILE: MSMg01no485_p09.g1 PHD_FILE: MSMg01no485_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,080,088 - 55,080,592)(54,907,242 - 54,907,865)
sequence
TTCCAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGACATTCTCCTCCCAAAAATTCAGTTGCTGCGGTGAGA
ATAAAATTGGATACTCTCTAGTTAAAAGATTAAACAAAATACTTGGTGAA
TATCTGTTTCATACTATAAATATATCTATCCAGTGGTCTTTACATGCACC
CCATTTTCCTTAAACTGCTGTGTACAGTATGCTACAGTTATCTTCCACAT
CAGAAGATGAGAATACAACAGGAAATGAGGGCTAAAGTCATGATGTGACT
CTCTTATCTTCAGGAGGATAGCTCAGACCTTTTCTGCTATAACAAACTAT
CTGTAAGAATGCAAAGGCACTCTCAGGATGCAGAAAAAAATGCCCACTAA
GGTGGATAACCCAGGTAAAAACAAACAAACAAACAAGCAAGTAAACAAAC
ACCCAGTAGGTATTGATACCACTATTGTGGTGGAAACTTGATGGGTAGGT
GGTATCCCTTGACAAGTTTTCTTCAAAATAAAAGACTTTTAACAGTACAA
AGAGATAATCCTGAAGTAGCTAGAGGGGTAAGGAACACAGAAGACAAAGT
CCAGATCCAATTTCTTGAAACTGAATTCAGCTTCTGACCAACTTAACTTG
GCCAAATGTCAGAAGAAGTCCACTTATTTTGGAGACCCTGGTATAATTCT
AGACACAAGCCTGTGAGGAAAGCCAGGATAAAG

NTTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGACTGGAATAGTAATAAA
GGTTTTAGTTTGGAATTGGAATGCTGCAGAGAACTTAGGAGGTATATAGG
AAAAAAAATAACCCTTTTCTATTATCTACCCACACCCTGTCTGGTTTAAA
CTCAGACTGACTGATTTCTGTTTTCCCTAAGTGCTCACTCACCATAACAG
CGTTTTTACACACTGCACAACCATCATACACACATGCATACAATTATGGC
TGGACATACAGGAGGGGTTGTGGATGAATGGATTGTTCATTCCTGATGCG
TCAGTTCCCTGATTCACATTCAACACATGGAGCATGAAAGCAGATTTCTT
TTAGAAGAGGGGAAAAAAAAAAAACCAACAACAACAGTTGGCTGCTGTAG
AGTGGAATTTGTGGGTCAGATCTTAATTCCTGGAATATATCAGCAAATGA
GTCTTAAACTTGTAGGTTACAGTGTTTATCTAAAATGATGTCTGCGTTGG
AGGAAAGAGGTGGTGGGCACGTGGAAAGAAAGGTTTAACATCCCTTCATG
TTTGTTAGCAGCGGGATTTGGCATTAAAAGCTACAGTGAGTATGTTTCGA
AAGTTAAAGTATTCTCATACTGATCACGTTTGTTTCCTAAGGTGGGGATG
AGTTTGAATTGTATATAAGACATGGAAACTACTAACAGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_p09.b1 MSMg01no485_p09.b1 CHROMAT_FILE:
MSMg01no485_p09.b1 PHD_FILE: MSMg01no485_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:07 2005
         (505 letters)



>mm_chr4_55080049_55080953
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaaaattcagttgctgcggtgagaataaaattggatactctctagttaaaagattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccaaaaattcagttgctgcggtgagaataaaattggatactctctagttaaaagattaaa 485

                                                                       
Query: 61  caaaatacttggtgaatatctgtttcatactataaatatatctatccagtggtctttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caaaatacttggtgaatatctgtttcatactataaatatatctatccagtggtctttaca 425

                                                                       
Query: 121 tgcaccccattttccttaaactgctgtgtacagtatgctacagttatcttccacatcaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 424 tgcaccccattttccttaaactgctgtgtacagtatgctacagttatcttgcacatcaga 365

                                                                       
Query: 181 agatgagaatacaacaggaaatgagggctaaagtcatgatgtgactctcttatcttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agatgagaatacaacaggaaatgagggctaaagtcatgatgtgactctcttatcttcagg 305

                                                                       
Query: 241 aggatagctcagaccttttctgctataacaaactatctgtaagaatgcaaaggcactctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aggatagctcagaccttttctgctataacaaactatctgtaagaatgcaaaggcactctc 245

                                                                       
Query: 301 aggatgcagaaaaaaatgcccactaaggtggataacccaggtaaaaacaaacaaacaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggatgcagaaaaaaatgcccactaaggtggataacccaggtaaaaacaaacaaacaaac 185

                                                                       
Query: 361 aagcaagtaaacaaacacccagtaggtattgataccactattgtggtggaaacttgatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aagcaagtaaacaaacacccagtaggtattgataccactattgtggtggaaacttgatgg 125

                                                                       
Query: 421 gtaggtggtatcccttgacaagttttcttcaaaataaaagacttttaacagtacaaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gtaggtggtatcccttgacaagttttcttcaaaataaaagacttttaacagtacaaagag 65

                                    
Query: 481 ataatcctgaagtagctagaggggt 505
           |||||||||||||||||||||||||
Sbjct: 64  ataatcctgaagtagctagaggggt 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_p09.g1 MSMg01no485_p09.g1 CHROMAT_FILE:
MSMg01no485_p09.g1 PHD_FILE: MSMg01no485_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:07 2005
         (624 letters)



>mm_chr4_54907042_54908065
          Length = 1024

 Score = 1207 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgactggaatagtaataaaggttttagtttggaattggaatgctgcagagaacttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgactggaatagtaataaaggttttagtttggaattggaatgctgcagagaacttagg 260

                                                                       
Query: 61  aggtatataggaaaaaaaataacccttttctattatctacccacaccctgtctggtttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtatataggaaaaaaaataacccttttctattatctacccacaccctgtctggtttaa 320

                                                                       
Query: 121 actcagactgactgatttctgttttccctaagtgctcactcaccataacagcgtttttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagactgactgatttctgttttccctaagtgctcactcaccataacagcgtttttac 380

                                                                       
Query: 181 acactgcacaaccatcatacacacatgcatacaattatggctggacatacaggaggggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactgcacaaccatcatacacacatgcatacaattatggctggacatacaggaggggtt 440

                                                                       
Query: 241 gtggatgaatggattgttcattcctgatgcgtcagttccctgattcacattcaacacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggatgaatggattgttcattcctgatgcgtcagttccctgattcacattcaacacatg 500

                                                                       
Query: 301 gagcatgaaagcagatttcttttagaagaggggaaaaaaaaaaaaccaacaacaacagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcatgaaagcagatttcttttagaagaggggaaaaaaaaaaaaccaacaacaacagtt 560

                                                                       
Query: 361 ggctgctgtagagtggaatttgtgggtcagatcttaattcctggaatatatcagcaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgctgtagagtggaatttgtgggtcagatcttaattcctggaatatatcagcaaatg 620

                                                                       
Query: 421 agtcttaaacttgtaggttacagtgtttatctaaaatgatgtctgcgttggaggaaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcttaaacttgtaggttacagtgtttatctaaaatgatgtctgcgttggaggaaagag 680

                                                                       
Query: 481 gtggtgggcacgtggaaagaaaggtttaacatcccttcatgtttgttagcagcgggattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggtgggcacgtggaaagaaaggtttaacatcccttcatgtttgttagcagcgggattt 740

                                                                       
Query: 541 ggcattaaaagctacagtgagtatgtttcgaaagttaaagtattctcatactgatcacgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcattaaaagctacagtgagtatgtttcgaaagttaaagtattctcatactgatcacgt 800

                                   
Query: 601 ttgtttcctaaggtggggatgagt 624
           ||||||||||||||||||||||||
Sbjct: 801 ttgtttcctaaggtggggatgagt 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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