Query= MSMg01no486_h20.b1 MSMg01no486_h20.b1 CHROMAT_FILE:
MSMg01no486_h20.b1 PHD_FILE: MSMg01no486_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:49 2005
(646 letters)
>mm_chr4_20829999_20831044
Length = 1046
Score = 1094 bits (566), Expect = 0.0
Identities = 619/646 (95%), Gaps = 16/646 (2%)
Strand = Plus / Plus
Query: 6 aattctttgaccctttgcttccagtttgacctcagtttgacttgtaattacagagcctgt 65
|||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct: 217 aattctttgacccttttcttc-----------cagtttgacttgtaattacagtgcctgt 265
Query: 66 tatttccaaatgtggtagaggtggtaaatattttcacttatgttttatagagagcaccat 125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266 tatttccaaatgtggtagaggtggtgaatattttcacttatgttttatagagagcaccat 325
Query: 126 tcaatgtcagagaaaatcttgcttctttccttttgttcttttatagttcttataagttgt 185
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 326 tcaatgtcagagaaaatcttgcttctttccttttgttcttctatagttcatataagttgt 385
Query: 186 actaaagtcataaccattgagaactttatcagaaatagtatcattttattatctaacaga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actaaagtcataaccattgagaactttatcagaaatagtatcattttattatctaacaga 445
Query: 246 attcttgattcagagagttctagttaagttacttttttgttatgataaatatcatgacca 305
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 attcttgattcagagagttctagttaagttacttttttgttatgataaataccatgacca 505
Query: 306 aaagcaactagggtgaagaaagtgttaggacaaaatattgacaatttgtatataggagtg 365
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaagcaactagggggaagaaagtgttaggacaaaatattgacaatttgtatataggagtg 565
Query: 366 ttaatttagcttaatgtattgagaagtcaattctatatcagaaactactggagtatcagt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttaatttagcttaatgtattgagaagtcaattctatatcagaaactactggagtatcagt 625
Query: 426 ttttaaatatagtctaatgtagggatagccccatgcctttttatgaacaatcttatctgc 485
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 626 ttttaaatatagtctaatgtagggatagccccatacctttttatgaataatcttatctgc 685
Query: 486 tcttttttgtttgtgttgt-----gttgtgttgttttctgaacaggtattaagtttctca 540
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttttttgtttatgttgtattgtgttgtgttgttttctgaacaggtattaagtttctca 745
Query: 541 gagtattagaatgttgtgtgaaaaacagtaattataacagggagcaaagtaaggcacata 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 746 gagtattagaatgttgtgtgaaaaacaataattataacagggagcaaagtaaggcacata 805
Query: 601 ctgtttctgagactcagatattgactgtcagatgaaagccaattgg 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ctgtttctgagactcagatattgactgtcagatgaaagccaattgg 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_h20.g1 MSMg01no486_h20.g1 CHROMAT_FILE:
MSMg01no486_h20.g1 PHD_FILE: MSMg01no486_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:49 2005
(604 letters)
>mm_chr4_20852119_20853129
Length = 1011
Score = 942 bits (487), Expect = 0.0
Identities = 515/527 (97%), Gaps = 7/527 (1%)
Strand = Plus / Minus
Query: 1 tggattagcttttctgactttatttttgccccaatcttttcaggcaagattatattaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tggattagcttttctgactttatttttgccccaatcttttcaggcaagattatattaagt 644
Query: 61 catatcactcg--tgg--aatacactacactggattcctgttttatttatgttaaaaatc 116
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 catatcactcgtttggttaatacactacactggattcctgttttatttatgttaaaaatc 584
Query: 117 caaatattaactttcaaaaattaaggcttaacctcctctctgcctgcttgtgtttatttt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caaatattaactttcaaaaattaaggcttaacctcctctctgcctgcttgtgtttatttt 524
Query: 177 ctgccatagaaagattgcttaccatggagcgtccctactgtcctgtacataaacttaagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctgccatagaaagattgcttaccatggagcgtccctactgtcctgtacataaacttaagt 464
Query: 237 tcatatcaactctgagtataatgaagctatataaaatttttggatttcgacaaa---tct 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 463 tcatatcaactctgagtataatgaagctatataaaatttttggatttcgacaaatcttct 404
Query: 294 taaaatccatgttcagtaacttttatgatgaaaaattttcttcacacttttattcttact 353
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 403 taaaatccatgttcagtaacttttatgatgaaaaatttccttcacactttttttcttact 344
Query: 354 gcagaatcttggtaatagtatatatcacaaagatataatatgtgaagattgtatcatcga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcagaatcttggtaatagtatatatcacaaagatataatatgtgaagattgtatcatcga 284
Query: 414 catgttaatgtgtaatagacaatgagtttccagaagctatcaatatatagaggaactaaa 473
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 283 catgttaatgtgtaatagacaatgagtttccagaagctatcagtatacagaggaactaaa 224
Query: 474 gtacaagtatatttgtccttgtgatatatatatatatatatttatat 520
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 223 gtacaagtatatttgtccttgtgatatatatatatatatatatatat 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1011
Length adjustment: 10
Effective length of query: 594
Effective length of database: 1001
Effective search space: 594594
Effective search space used: 594594
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
