Query= MSMg01no486_l08.b1 MSMg01no486_l08.b1 CHROMAT_FILE:
MSMg01no486_l08.b1 PHD_FILE: MSMg01no486_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(568 letters)
>mm_chr4_81981790_81982757
Length = 968
Score = 1015 bits (525), Expect = 0.0
Identities = 558/569 (98%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 1 aggcaggtatcatgtctaggtagcttgttttcgaatcccttatgtgtgagagaagctgtg 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 201 aggcaggtatcatgtctaggtagcttgttttcgaatttcttatgagtgagagaagctgtg 260
Query: 61 agatgggatattcaccagcagaacagtgagcagaatcaacccaagatggctagcttcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgggatattcaccagcagaacagtgagcagaatcaacccaagatggctagcttcaaa 320
Query: 121 tacacactccattaaccataataaggatgtactgtgtgagaaacaatttactttcaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacactccattaaccataataaggatgtactgtgtgagaaacaatttactttcaataa 380
Query: 181 aagggggaaaataaagtttatagtggaacatggtttaacaacaacaaaagagcggttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggggaaaataaagtttatagtggaacatggtttaacaacaacaaaagagcggttaaa 440
Query: 241 gaagctctaagagagacatcaaaggcaaccactgagcaccccc-aaaatgtgagggggtt 299
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gaagc-caaagagagacatcaaaggcaaccactgagcaccccccaaaatgtgagggggtt 499
Query: 300 cagctgtacacaaagttcaaggtgtgaaacaagtctccctgcccatgctctggtgaagct 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 cagctgtacacaaagttcaaggtgtgaaacaagtctccctgcccatgttctggtgaagct 559
Query: 360 ctcaatccagctaaaggggcggatggaaaagacaaatttcattaaataattataaccctg 419
| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 cacaatccagctaaaggggtggatggaaaatacaaatttcattaaataattataaccctg 619
Query: 420 ataatattaggttgtaccaaggatttgtcttagtgacaaaagtctaggagggctaagcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataatattaggttgtaccaaggatttgtcttagtgacaaaagtctaggagggctaagcct 679
Query: 480 tcaaaaagaaagatgcatgttgaaggcaatgctctttgctgtccacacctgtgcttttga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 tcaaaaagaaagatgcatgttgaaggcaatgctctttgctgtccacacctgtgcttt-ga 738
Query: 540 ttcataattggacaattagctatggcttt 568
|||||||||||||||||||||||||||||
Sbjct: 739 ttcataattggacaattagctatggcttt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l08.g1 MSMg01no486_l08.g1 CHROMAT_FILE:
MSMg01no486_l08.g1 PHD_FILE: MSMg01no486_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(591 letters)
>mm_chr4_82136976_82137966
Length = 991
Score = 878 bits (454), Expect = 0.0
Identities = 476/484 (98%), Gaps = 2/484 (0%)
Strand = Plus / Minus
Query: 1 taattatgtgctgtggttaatttaacagaatttggcggttaggatttggcttagagaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taattatgtgctgtggttaatttaacagaatttggcggttaggatttggcttagagaaca 423
Query: 61 tcaaatcatccaactgtaggggaacttgtgagaactgagtgtatacagcagggagtgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcaaatcatccaactgtaggggaacttgtgagaactgagtgtatacagcagggagtgagg 363
Query: 121 ttgtgggattaacttgtattacctggaagttacaggacgtgagactaataatacctgaat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgtgggattatcttgtattacctggaagttacaggacgtgagactaataatacctgaat 303
Query: 181 ggttgggcttgttggctgttaagttattcagagaattgggataaatggctaccaattaac 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 302 ggttgggcttgttggctgttaagttattcagaaaattgggataaatggctaccaattaac 243
Query: 241 cattgttgtggagagaccttgaggctgagttgagggctacacattaaaaaaaaaaaatct 300
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 242 cattgaggtggagagaccttgaggctgagttgagggctacacatt--aaaaaaaaattct 185
Query: 301 tataatttaagcaaagcagtcttcgattgccattcatgtgcatcagtacattgtttataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tataatttaagcaaagcagtcttcgattgccattcatgtgcatcagtacattgtttataa 125
Query: 361 taaaacacttagacacacagtctctctggttgtgatgatagtttaagcaggacactgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 taaaacacttagacacacagtctctctggttgtgatgatagtttaagcaggacactgttg 65
Query: 421 atgaatcatagacaaattaaagaactttgaataaagactatataattgggaatatggagt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgaatcacagacaaattaaagaactttgaataaagactatataattgggaatatggagt 5
Query: 481 gatg 484
||||
Sbjct: 4 gatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
