BAC Information

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BAC

Clone NameMSMg01-486L19
Chromosome4 (Build37)
Map Location 128,419,640 - 128,420,237
singlet/doubletsinglet
Overlap genePhc2
Upstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12
Downstream geneA3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486L19.T7 (MSMg01no486_l19.b1)MSMg01-486L19.TJ (MSMg01no486_l19.g1)
ACCAG565870AG565871
length739763
length of high quality
(start - end)
539 (75 - 613)598 (74 - 671)
definitionCHROMAT_FILE: MSMg01no486_l19.b1 PHD_FILE: MSMg01no486_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:07 2005CHROMAT_FILE: MSMg01no486_l19.g1 PHD_FILE: MSMg01no486_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATC
CGCGGAATTCCATAATTCTTTCTTCTATCAGTTAAATAACATTCCACTCT
ATCTATGCACATTTTCACTCTCCATTATCATCAGCAGAAGGGCGTCCAGG
CTGTTTCCATTATCTGAATTGTGCATAAAGCAGAATGAATGTGGATGAGA
AAGCAGCTCTCTGCAGCAGGGTATGCTGAGGAATGGCATCGCTGGATCAC
AGGACAGATCTGTTGCTAGCTTTGTGGGATCCCTCCGCTGTGATTCCCAC
AGGGCTGGACCAGTTACACTTCTGCTAAGAGTCAGGAGTGCTCCCCTGCC
CCCATGTCCACACCACTATAGGTTGTCAGCTGTTGCTGCTGCTGTTGTTG
CCATTGCCGTTGTTGTTGCTGTTGCCGCCGCTGCTGCTGTTTTATTCTTA
ACTATCCTGACTGGGGTAAGGTAAAATCTCAAAACCGTTCTAATTCGCAC
TTTGCCCGGAGCCATCAAGGAGAAGCTAACAACTAGCAGGTAATCTTGCT
GAGATGGTTCTGCCGTGGACTGTGAAAGTTAATGATGGAACTGTTTCTCT
AGGCAAGGCCGAGAAGAATTTCATTTTAGGAAAGATTCCTGCTATTAATA
TACTTTTCCTGTTATTATTAAATATATATAACAATCACTAAGTATTAGCT
CACCCTTTTGAACAGATCTCTGCAGAACACTAAAGATGT
GATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATAGTGACCAAGATATTTAAAGCCAA
ACCAAGAAGCTCCACTAACCCTAGGCTCATGGTATCAGAGAGCAGCTTGG
CGGAGAGAGGTTAAAGGAACCTTCTCTAAGATTCCTTGGAGGGTCAGACT
TTAACAGCGCTGTGAAATGGACGCCCAGGGAAGCGGGAGGTGGAGACCCC
AGCAGGCGCCTCCTCAGGTGCCACCACACTGACTTACAGGGTTGTTTTGT
TTCTCCCATGCTGAAGCTGTTGGCACTGCCGCCACTTTGCTCTGCTGACT
CCTGCTTTTACTCAGACCTCTTGCTCAGAACGCAGTGTACACTCCACCCA
GCCCTCCGCAAACTATACTCCCTCCATCTCTCGGTGGACAGCCTTCCTAA
CCTCTCCTTCAGAAAACTCAACACAATGCTCTGGAGAGTGGGATGGGACC
TTTCCCATGCCCATCAAGACTAGCCTCCTCCCCTTCTGCCAGCATCTCCC
AGTGATGTGTCACACCCTCTCCCCAGTCCCTTTCCCAAGGCTGTTTTCTG
TCACCACCAAGTGTTCAGTGAGCTGAGGAACCTTTAACCTGGAACTTCCT
AAAAGAGAGAGGTGGAAAAGCTGTTTCTTTACTGCAATAAGCCTATTAAT
ATTAAGCATAAACCAGCGGTATATGACAAAGTTAAAACCTTATTAAAATA
ATAAAAGTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_l19.g1 MSMg01no486_l19.g1 CHROMAT_FILE:
MSMg01no486_l19.g1 PHD_FILE: MSMg01no486_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
         (598 letters)



>mm_chr4_128419440_128420437
          Length = 998

 Score = 1133 bits (586), Expect = 0.0
 Identities = 595/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagtgaccaagatatttaaagccaaaccaagaagctccactaaccctaggctcatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aatagtgaccaagatatttaaagccaaaccaagaagctccactaaccctaggctcatggt 739

                                                                       
Query: 61  atcagagagcagcttggcggagagaggttaaaggaaccttctctaagattccttggaggg 120
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 738 atcagagagcagcttggcggagagaggttaaaggaagcttctctgagattccttggaggg 679

                                                                       
Query: 121 tcagactttaacagcgctgtgaaatggacgcccagggaagcgggaggtggagaccccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcagactttaacagcgctgtgaaatggacgcccagggaagcgggaggtggagaccccagc 619

                                                                       
Query: 181 aggcgcctcctcaggtgccaccacactgacttacagggttgttttgtttctcccatgctg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggcgcctcctcaggcgccaccacactgacttacagggttgttttgtttctcccatgctg 559

                                                                       
Query: 241 aagctgttggcactgccgccactttgctctgctgactcctgcttttactcagacctcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aagctgttggcactgccgccactttgctctgctgactcctgcttttactcagacctcttg 499

                                                                       
Query: 301 ctcagaacgcagtgtacactccacccagccctccgcaaactatactccctccatctctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcagaacgcagtgtacactccacccagccctccgcaaactatactccctccatctctcg 439

                                                                       
Query: 361 gtggacagccttcctaacctctccttcagaaaactcaacacaatgctctggagagtggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtggacagccttcctaacctctccttcagaaaactcaacacaatgctctggagagtggga 379

                                                                       
Query: 421 tgggacctttcccatgcccatcaagactagcctcctccccttctgccagcatctcccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgggacctttcccatgcccatcaagactagcctcctccccttctgccagcatctcccagt 319

                                                                       
Query: 481 gatgtgtcacaccctctccccagtccctttcccaaggctgttttctgtcaccaccaagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatgtgtcacaccctctccccagtccctttcccaaggctgttttctgtcaccaccaagtg 259

                                                                     
Query: 541 ttcagtgagctgaggaacctttaacctggaacttcctaaaagagagaggtggaaaagc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttcagtgagctgaggaacctttaacctggaacttcctaaaagagagaggtggaaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)