BAC Information

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BAC

Clone NameMSMg01-486L21
Chromosome4 (Build37)
Map Location 56,267,091 - 56,458,329
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486L21.T7 (MSMg01no486_l21.b1)MSMg01-486L21.TJ (MSMg01no486_l21.g1)
ACCAG565874AG565875
length753798
length of high quality
(start - end)		559 (75 - 633)507 (73 - 579)
definitionCHROMAT_FILE: MSMg01no486_l21.b1 PHD_FILE: MSMg01no486_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:07 2005CHROMAT_FILE: MSMg01no486_l21.g1 PHD_FILE: MSMg01no486_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,458,142 - 56,458,329)(56,267,091 - 56,267,597)
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCG
CGGAATTCTGGAAGTTATTTGCTGGCACATCTATTTGATTGATGGAACAA
TGAAGACTTAGGATGTTGCTCTAACTTGCCCAAGGTGATAGACTAAGGGA
ACAATAGACCAGGCCGAAATTCAAGGCAGTCTGAACTGAGAACTTGCCTT
CTACCTAGTATCCCTTACTTCTGTAATGAAGTGTAGAACATTCCTTCTAC
CTTGTCTTTCTTACTTCTATACTTAGTGTTTGTAGAAAATGTTTACCTGT
TAGTGATGGCAAATGCTTTTGGGGAATGAGTCCCCTCATTAGGAGAAAGT
GCACTAGGTCAACTTATAGAGTAAGAAGCCCTGGTATTTTGGTACTGATA
TAGTCTATAAGTGGGCACATTAAACTGTGTCTCTGTCTATTTTCTACTAT
GAAAAGGAACTCAGAGGGTTGAATGATTAGGAAAGAGTAACCTTAAAACT
ACCAGGGAAGATGAGATTGCAGAGATTCAACCTTTTATCATCATAATATT
ATGATGTTAGCAGGAGAAACATTTGATAACACCGCTGCTGATAGAATACC
ATCAAGATTATTTCCCCACACATCCACTGTGCCAACCGTGTTCTAAGCAT
CATCTTATAAATCCCCCAACCACCAGAGGAGGTGTGCTCATCATACACAG
ATGCAGAGAGACCCACCATCTTGCACTTTGGTATTGACTCCTAGAAATGA
AAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCATGACATTGTCACATATTGCCTGCT
AGTCGGTGAGCACATTCAGGACTCTTGTGCACCAAACCATGAGGTACTTG
GAATAGAGGGTGACTCAGTAAGTGTTTGTAGATTAAAGACATGAATGTGA
CAAGAATCCAAGAAGACCCAGAAGCAAGCTTGAGAAATGGCAGCTCTGCA
CCATGTTAGTAGATTATGCACCTAGAAAAGGAACCCTCAAATACATGGGT
ACAGCCTGTGGCCAGTGGGATCCGTACACCCTAGATTAGGGTCAAATGTG
GCCCAACACATATGTAGATGACCACATCATGTCACAAGTCAAGAGATGGG
ACATCTCTGGTAGAGGACAGAAAGCAAGAGTGGAAAATCCCACAAGCAGC
TTTGTATGAAAATTTCAAAAGATGCCAGCACAAGGGGCCTACCACAACCA
GGGCTGTGGGACCACCCTGCAAAACAATGCCGTATTCTCAGACCTACATG
GGAACCCCCAAGAGTCTCCCTCATTGTGCTGTCAGGCCACACAATCTGGA
AATGTACTGTCACATATTTCAGGCTGTGCTATGTGCTGGCCCACTCTACT
GTTTACAGGAACAGCATTCTCCCGGCTCAAAGATATTCCCAGACCCCCTG
ATAGGAAAGTGTTTTTAAACCAAAAGGCCGGAGAAAATTATCAGCCTGCA
GGGTTTTTAGAATGGGATCAAAAGGGTATCCACCGAACCCCCCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_l21.b1 MSMg01no486_l21.b1 CHROMAT_FILE:
MSMg01no486_l21.b1 PHD_FILE: MSMg01no486_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
         (559 letters)



>mm_chr4_56457942_56458900
          Length = 959

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacatctatttgattgatggaacaatgaagacttaggatgttgctctaacttgcccaag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 gcacatctatttgattgatggaacaatgaagacttaggaggttgctctaacttgcccaag 329

                                                                       
Query: 61  gtgatagactaagggaacaatagaccaggccgaaattcaaggcagtctgaactgagaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgatagactaagggaacaatagaccaggccgaaattcaaggcagtctgaactgagaact 269

                                                                       
Query: 121 tgccttctacctagtatcccttacttctgtaatgaagtgtagaacattccttctaccttg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 268 tgccttctacctagtatcccttacttctgtagtgaagtgtagaacattccttctaccttg 209

                   
Query: 181 tctttctt 188
           ||||||||
Sbjct: 208 tctttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_l21.g1 MSMg01no486_l21.g1 CHROMAT_FILE:
MSMg01no486_l21.g1 PHD_FILE: MSMg01no486_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:08 2005
         (507 letters)



>mm_chr4_56266891_56267797
          Length = 907

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatgacattgtcacatattgcctgctagtcggtgagcacattcaggactcttgtgcac 60
           |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 201 atcatgacattgtcacatattgcctgctagccggtgagcacactcgggactcttgtgcac 260

                                                                       
Query: 61  caaaccatgaggtacttggaatagagggtgactcagtaagtgtttgtagattaaagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaccatgaggtacttggaatagagggtgactcagtaagtgtttgtagattaaagacat 320

                                                                       
Query: 121 gaatgtgacaagaatccaagaagacccagaagcaagcttgagaaatggcagctctgcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgtgacaagaatccaagaagacccagaagcaagcttgagaaatggcagctctgcacc 380

                                                                       
Query: 181 atgttagtagattatgcacctagaaaaggaaccctcaaatacatgggtacagcctgtggc 240
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 atgttagtagactatgcacctagaaaaggaaccctcaagtacatgggtacagcctgtggc 440

                                                                       
Query: 241 cagtgggatccgtacaccctagattagggtcaaatgtggcccaacacatatgtagatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgggatccgtacaccctagattagggtcaaatgtggcccaacacatatgtagatgac 500

                                                                       
Query: 301 cacatcatgtcacaagtcaagagatgggacatctctggtagaggacagaaagcaagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatcatgtcacaagtcaagagatgggacatctctggtagaggacagaaagcaagagtg 560

                                                                       
Query: 361 gaaaatcccacaagcagctttgtatgaaaatttcaaaagatgccagcacaaggggcctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaatcccacaagcagctttgtatgaaaatttcaaaagatgccagcacaaggggcctac 620

                                                                       
Query: 421 cacaaccagggctgtgggaccaccctgcaaaacaatgccgtattctcagacctacatggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaaccagggctgtgggaccaccctgcaaaacaatgccgtattctcagacctacatggg 680

                                      
Query: 481 aacccccaagagtctccctcattgtgc 507
           |||||||||||||||||||||||||||
Sbjct: 681 aacccccaagagtctccctcattgtgc 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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