BAC Information

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BAC

Clone NameMSMg01-487G08
Chromosome4 (Build37)
Map Location 109,910,116 - 109,910,729
singlet/doubletsinglet
Overlap geneElavl4
Upstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G08.T7 (MSMg01no487_g08.b1)MSMg01-487G08.TJ (MSMg01no487_g08.g1)
ACCAG566370AG566371
length738739
length of high quality
(start - end)
398 (330 - 727)614 (75 - 688)
definitionCHROMAT_FILE: MSMg01no487_g08.b1 PHD_FILE: MSMg01no487_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:59 2005CHROMAT_FILE: MSMg01no487_g08.g1 PHD_FILE: MSMg01no487_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTATCTATAATTGCGGCCGCTAAACGACTCCTATTTTCAGAAGAGCGC
GGAATTCTTACCTTTTCCAACAGAATGGCTGAGAAGCACCTGAAAAAATG
TTCGGCATCCTTAATCATCAGGGAAATGCAAATCAAAACTACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTTACAGC
AGATGCTGGCAAGGATGTAGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCATCTTGCGCGCACCAGACTGGCCAGCAGTAACGACGCTGCAAC
AGGATCCTTCTGCACACGTTTATTGTTTAGAGCTTGATTGCAGAAGTGAA
GAGACCCCAAGCCCAGAACTGGTACTGCTTATATAGGCCTAGGAGAGGCG
TGTCTCACACCCGGATTGGTTATGCACTACGCCTCATTTGCATGTTCCTC
ATCTGATTGGCTACTCTCTCTCTGTTCCTCACAGAGCCTCATTATCATAC
CTCATTTGCATGTCTCACATCTGATTGGTTATATTCTCAAAGCCTCATTA
TCATGCCCGGGCCAGGCAGTGTCTTTGCAAAAAACTTTACTGCATATGTA
CACATTGGTTGTTTGTCCAAACTTATGCGTGGTGGCCAGCAGTAGTCAGT
GCCACTCTGCAACGGCACATGTGGCTTCCCACAATTGAAAGCTTGTACAA
CCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATT
NCGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACTGCGAAAATCTTAATTCTTGGTTGGTTTATTCTCAA
CAGGAAACAAAGGTCTGGGTGTCAGATAGACAAGACTTCCCACCCCGAGT
GGATGCAAACCAACAGGTGATTCCGGAAGCAGTGCACTGCAGATGTTAAA
GACAATGGTTTAGCAACAAAAAAGGAAGAAGAGGCAAAAAGATCTACCAG
ATTAATACTAATTGTGTGCCCTGTAATTAGCCTTTGGGCAAAATGAAACT
TCATGTGTGAAGTGTCTGTTTTTTAATAGAACCACTGAATTAAATACTGA
GACAACGGCTTTCAAGAGTCCCCCCACCAGACAGTATCCTTATAAAGGGC
ATGTAGAAGCTGCTAATGTCACACTGAAATGTAGATTAAATGAGATAGGT
TGTGTCTATCTCATTTGGCACAAAGGAGTGCTCCATAAATATTAGCAGAA
TAGAAGCCTATTGGAACAGATGAAGAAAGATTTCTGTCCTCACTAAAGGA
GATGAGATAGAGGCTTGTACAGAGGTAAGTCAGGATGTCAAATATTAGCT
GGAGCAGGACCTTGGAAGCCTACCAGAGTGTCCTTTCTGCAGTAAGGAGT
TGGGCTTCTCCGGCCTTGGATCTACCTTGCTAATGTGAAGACAAGCTCTC
CTATTCCCACCATGGAAGAGCTCATTGTCAGGAAGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g08.g1 MSMg01no487_g08.g1 CHROMAT_FILE:
MSMg01no487_g08.g1 PHD_FILE: MSMg01no487_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:00 2005
         (614 letters)



>mm_chr4_109909916_109910929
          Length = 1014

 Score = 1149 bits (594), Expect = 0.0
 Identities = 609/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattcttggttggtttattctcaacaggaaacaaaggtctgggtgtcagatagacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattcttggttggtttattctcaacaggaaacaaaggtctgggtgtcagatagacaag 260

                                                                       
Query: 61  acttcccaccccgagtggatgcaaaccaacaggtgattccggaagcagtgcactgcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcccaccccgagtggatgcaaaccaacaggtgattccggaagcagtgcactgcagat 320

                                                                       
Query: 121 gttaaagacaatggtttagcaacaaaaaaggaagaagaggcaaaaagatctaccagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaagacaatggtttagcaacaaaaaaggaagaagaggcaaaaagatctaccagatta 380

                                                                       
Query: 181 atactaattgtgtgccctgtaattagcctttgggcaaaatgaaacttcatgtgtgaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactaattgtgtgccctgtaattagcctttgggcaaaatgaaacttcatgtgtgaagtg 440

                                                                       
Query: 241 tctgttttttaatagaaccactgaattaaatactgagacaacggctttcaagagtccccc 300
           |||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtgggtgaatagaaccactgaattaaatactgagacaacggctttcaagagtccccc 500

                                                                       
Query: 301 caccagacagtatccttataaagggcatgtagaagctgctaatgtcacactgaaatgtag 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccagacactatccttataaagggcatgtagaagctgctaatgtcacactgaaatgtag 560

                                                                       
Query: 361 attaaatgagataggttgtgtctatctcatttggcacaaaggagtgctccataaatatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaaatgagataggttgtgtctatctcatttggcacaaaggagtgctccataaatatta 620

                                                                       
Query: 421 gcagaatagaagcctattggaacagatgaagaaagatttctgtcctcactaaaggagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaatagaagcctattggaacagatgaagaaagatttctgtcctcactaaaggagatg 680

                                                                       
Query: 481 agatagaggcttgtacagaggtaagtcaggatgtcaaatattagctggagcaggaccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatagaggcttgtacagaggtaagtcaggatgtcaaatattagctggagcaggaccttg 740

                                                                       
Query: 541 gaagcctaccagagtgtcctttctgcagtaaggagttgggcttctccggccttggatcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcctaccagagtgtcctttctgcagtaaggagttgggcttctccggccttggatcta 800

                         
Query: 601 ccttgctaatgtga 614
           ||||||||||||||
Sbjct: 801 ccttgctaatgtga 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)