Query= MSMg01no487_p14.b1 MSMg01no487_p14.b1 CHROMAT_FILE:
MSMg01no487_p14.b1 PHD_FILE: MSMg01no487_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:44 2005
(507 letters)
>mm_chr4_40169571_40170477
Length = 907
Score = 934 bits (483), Expect = 0.0
Identities = 501/507 (98%)
Strand = Plus / Minus
Query: 1 tggatttggagggccagctgtataaaccatgggcttccatggaccttgtgcattgttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tggatttggagggccagctgtataaaccatgggcttccatggaccttgtgcattgttcta 757
Query: 61 ggctctgggacaccaatatacaagatatagtcctggctctcatacagttaagtttgcagg 120
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggctctgggacaccaatacagaagatatagtcctggctctcatacagttaagtttgcagg 697
Query: 121 gagccaggaacatagtagtcacatcttatcatgaggtatgctgcagagtcaggtaaaggg 180
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 696 gagccaggaacatagtagtcacagcttatcatgaggtatgctgcagagacaggtaaaggg 637
Query: 181 tgttgtcagaacataaggggtaataaggcatagaaatgaagggaactgacaggggcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgttgtcagaacataaggggtaataaggcatagaaatgaagggaactgacaggggcttgc 577
Query: 241 caggtagatagcttctggtttctagtaagagggtgctgtgtgtccaggggctcagggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caggtagatagcttctggtttctagtaagagggtgctgtgtgtccaggggctcagggaaa 517
Query: 301 tggaagggactgacatgccccagaaccttaaaactctacagtatcacttgagtgtagagt 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 516 tggaagggcctgacatgccccagaaccttaaaactctacagtatcacttgagggtagagt 457
Query: 361 gtgaagcagggaacaacagtcaagctgattgttatgacagatgacccagagacaccagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtgaagcagggaacaacagtcaagctgattgttatgacagatgacccagagacaccagga 397
Query: 421 gggcagagcgtcagtgggcaagtggatggcttagcacagggaacaagcagcagccttctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggcagagcgtcagtgggcaagtggatggcttagcacagggaacaagcagcagccttctg 337
Query: 481 atgtcatatgagaagagtcacttcaga 507
|||||||||||||||||||||||||||
Sbjct: 336 atgtcatatgagaagagtcacttcaga 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_p14.g1 MSMg01no487_p14.g1 CHROMAT_FILE:
MSMg01no487_p14.g1 PHD_FILE: MSMg01no487_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:45 2005
(233 letters)
>mm_chr4_40038243_40038875
Length = 633
Score = 261 bits (135), Expect = 2e-74
Identities = 173/189 (91%), Gaps = 7/189 (3%)
Strand = Plus / Plus
Query: 1 aagattgtctcaccttggcctccagaataatgggaccacaggcatgcacccccaccacag 60
|||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 201 aagattatctcaccttggcctcctgaataatgggatcacaggcacgcacccccaccacag 260
Query: 61 cttaaaattccgagaatcagactttcttcttattatcatcaaggtaaagtattttcttct 120
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagaattccaagaatcagactttcttcttattatcatcaaggtaaagtattttcttct 320
Query: 121 ccttccaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----gtg---tgtg 173
|||||||||||||||||||||||| ||| ||||||||||| ||||| ||| ||||
Sbjct: 321 ccttccaactctgtgtgtgtgtgtatgtctgtgtgtgtgtctgtgtatatgtggagtgtg 380
Query: 174 tgtgtgtgt 182
|||||||||
Sbjct: 381 tgtgtgtgt 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
