Query= MSMg01no488_i03.b1 MSMg01no488_i03.b1 CHROMAT_FILE:
MSMg01no488_i03.b1 PHD_FILE: MSMg01no488_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:27 2005
(173 letters)
>mm_chr4_43580412_43580984
Length = 573
Score = 311 bits (161), Expect = 1e-89
Identities = 170/173 (98%)
Strand = Plus / Plus
Query: 1 ggctgccagcccatagaccacacccacccagacttcatcatattgcccactggatctatc 60
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 201 ggctgccagcccatagaccacacccacccagacttcatcagactgcacactggatctatc 260
Query: 61 agggacaccatgagggtgcatcccgttcacggcccccatggctcctcctgcaaaggcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacaccatgagggtgcatcccgttcacggcccccatggctcctcctgcaaaggcttg 320
Query: 121 gacgttgagttcaaagatggtttggagagcacggaccacatgcagggtaggaa 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgttgagttcaaagatggtttggagagcacggaccacatgcagggtaggaa 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space: 93225
Effective search space used: 93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no488_i03.g1 MSMg01no488_i03.g1 CHROMAT_FILE:
MSMg01no488_i03.g1 PHD_FILE: MSMg01no488_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:27 2005
(390 letters)
>mm_chr4_43755711_43756514
Length = 804
Score = 588 bits (304), Expect = e-172
Identities = 375/412 (91%), Gaps = 30/412 (7%)
Strand = Plus / Minus
Query: 1 ataaaccaagaataacaccagcaaggacaacctccgggaagcaggctgcccctgatagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ataaaccaagaataacaccagcaaggacaacctccgggaagcaggctgcccctgatagga 545
Query: 61 ttgatggctagtgtaacgttccaggcaaactcttaatacttta----gtctgagctctct 116
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 544 ttgatggctagtgtaaagttccaggcaaactcttaatactttatttagtctgagctctct 485
Query: 117 ccctcagtacatttt----acccagaccaagaccaccagatggagcagttggagcatttg 172
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccctcagtaca----cagcacccagaccaagaccaccagatggagcagttggagcatttg 429
Query: 173 tgttgtaaggcttacttttattttttta---tgttttcttttaaatattgtttgtgagat 229
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 428 tgttgtaaggcttacttttattttt--aaaatgttttcttttaaatattgtttgtgagat 371
Query: 230 ctttctccttttttaagtaaatgtttaaatctggcctttat---atgtaaatcccctcca 286
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 370 ctttctccatttttaagtaaatgtttaaacctggcctttattttatgtaaatcccctcca 311
Query: 287 ctgtttttgagaaaaaggctaatgta--tcgcaggctatccttggacttttttggttttt 344
|||||||||||||| |||||||| | || ||||||||||||| ||||||||| |||||
Sbjct: 310 ctgtttttgagaaagaggctaat--aattcccaggctatccttgaacttttttgtttttt 253
Query: 345 t---tttttttccattgttgttgttattgt---gttatttttgagacagtct 390
| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 252 tggttttttttccattgttgttgttattgttgtgttatttttgagacagtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 804
Length adjustment: 9
Effective length of query: 381
Effective length of database: 795
Effective search space: 302895
Effective search space used: 302895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
