Query= MSMg01no488_m15.b1 MSMg01no488_m15.b1 CHROMAT_FILE:
MSMg01no488_m15.b1 PHD_FILE: MSMg01no488_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:48 2005
(553 letters)
>mm_chr4_102231754_102232706
Length = 953
Score = 994 bits (514), Expect = 0.0
Identities = 544/554 (98%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 gtctataaaataaaattatcggttacataggtctatggtaatatctagcccatcaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctataaaataaaattatcggttacataggtctatggtaatatctagcccatcaaatta 260
Query: 61 tgataaatagtaaattggctagtggatataaagtgcctaggaactgactgactgttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataaatagtaaattggctagtggatataaagtgcctaggaactgactgactgttgtta 320
Query: 121 gctacaatccttactgttattagcactactttgaagc-tttcatggtgggatgaatgtag 179
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 321 gctacaatccttactgttattagcactactttgaagcattt-atggtgggatgaatgtag 379
Query: 180 gccttggagtattctggttttagctacagtcttaggctctggagtagtataaccaaatag 239
|||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct: 380 gccttggagtattctggttttagctacagtcttaggctctagaacagtataacccaatag 439
Query: 240 tattttaactttatgtatatgagtgttttcctggatgtctgttcgtgtatcatttgtatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattttaactttatgtatatgagtgttttcctggatgtctgttcgtgtatcatttgtatc 499
Query: 300 cctggcactctaggaggtcaaagtggggttttagatcccctggagttgaagttacagttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctggcactctaggaggtcaaagtggggttttagatcccctggagttgaagttacagttt 559
Query: 360 gtgagacaccatgtgggtgctagcaacgtagccgaggtattctgcaagaatgtcaagtgt 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gtgagacaccatgtgggtgctagcaacgtagcctaggtattctgcaagaatgtcaagtgt 619
Query: 420 tcttaagcactgaaccatctctcaagctttcagaaacaattaattttaacatttaacttg 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcttgagcactgaaccatctctcaagctttcagaaacaattaattttaacatttaacttg 679
Query: 480 tcatatctaaaatactattgtttcaccctgtgatgaaatataaccagctacagtcttaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 tcatatctaaaatactattgtttcaccctgtgatgaaatataaccagctacagtctttaa 739
Query: 540 attttttgtacaaa 553
|||||||||||||
Sbjct: 740 tttttttgtacaaa 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m15.g1 MSMg01no488_m15.g1 CHROMAT_FILE:
MSMg01no488_m15.g1 PHD_FILE: MSMg01no488_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:48 2005
(522 letters)
>mm_chr4_102387459_102388380
Length = 922
Score = 679 bits (351), Expect = 0.0
Identities = 408/427 (95%), Gaps = 2/427 (0%)
Strand = Plus / Minus
Query: 1 ttcaaa-catctgaggctatgggggtctagctcatttagaccaccacgatgttctaagat 59
|||||| || |||||||| |||||||| | | ||||||||||||||||||||||||||||
Sbjct: 426 ttcaaacca-ctgaggctgtgggggtcaaccccatttagaccaccacgatgttctaagat 368
Query: 60 gttcctgtaaataattcaatggaagtggaagcaatcctgctgcacagtagccccgtagac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gttcctgtaaataattcaatggaagtggaagcaatcctgctgcacagtagccccgtagac 308
Query: 120 cttgtgtctgtgagatatttgcctagagaaaatgtggtccgttatcaaactgtttagcga 179
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 cttgtgtctctgagatatttgcctagagaaattgtggtccgttatcaaactgtttagcga 248
Query: 180 ctgtgatggctaatattgattactaacttgaaatgacctagagaagaaaccactgggcaa 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 ctgtgatggctaatattgattactaacttgaaatgacctagaggagaaaccactgggcaa 188
Query: 240 gtctgtttgaaattttctaggtttagctattcgaaataagaagacccatcttaatgtgga 299
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 187 gtctgtaagaaattttctaggtttagctatttgagataagaagacccatcttaatgtgga 128
Query: 300 tgttatgctgagggccagccctggctgttcttctttcttgtatggttcctcttgaggcag 359
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgttatgctgaggaccagccccggctgttcttctttcttgtatggttcctcttgaggcag 68
Query: 360 cagaggggaagaacattgatggggttaagacttggtcttacaagatattaaaggttgctg 419
| |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 67 cggaggggaagaacattgatggagctaagacttggtcttacaagatattaagggttgctg 8
Query: 420 tttaata 426
|||||||
Sbjct: 7 tttaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
