BAC Information

Click to search

BAC

Clone NameMSMg01-489A17
Chromosome4 (Build37)
Map Location 106,757,743 - 106,945,990
singlet/doubletdoublet
Overlap geneCdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik
Downstream geneDio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A17.T7 (MSMg01no489_a17.b1)MSMg01-489A17.TJ (MSMg01no489_a17.g1)
ACCAG567623AG567624
length765759
length of high quality
(start - end)		611 (74 - 684)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no489_a17.b1 PHD_FILE: MSMg01no489_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:08 2005CHROMAT_FILE: MSMg01no489_a17.g1 PHD_FILE: MSMg01no489_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,945,356 - 106,945,990)(106,757,743 - 106,758,315)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGC
GGAATTCACTCTGTTTCCCAAACTGGCCTCGAACTCAGAAATCCGCCTGC
CTCTGCCTCCCAAGTGCTAGGATTAAAGGCGTGTGCCACCACGCCCGGCT
AGTACTTTTTCTTAACTGACAAATATTCTCTTGTAAAATCCTGAAAGAGA
GCTGATGCCCTCCCATCTAAAAGGCTTCAGCAGTCCCCTAGTGACGACCA
GCCCAACCTCTTTCGTCCCACCTTACAACATCCCCCATCACTGCTTCCAC
AGCCAGCTGCTTGAGGCTCTCATACACATCATCAGACACACACGTCATAC
CTATATCAGACAATGAGCTCTCTTGACCCCAAAGTCCTTCTGCCTTTTGT
GAAGGTTTATGGTCCCTTCTCTAATTCAGCAGATGCACTCTACTTGCTTC
AGAGCATTTGTGCCCACTCTGCTTTGATGTCCCCTATAGGCTCAGATACT
TGCGTTTCTCTATTTTTATGTCCCTAATAACTATTATAGCAGGGGGCTCA
TAGTAGTATATAAACAATGTTTGCTGAAAAAAAAATGAAGTTTCAAATAT
CTCACGATTCACTAGGGTGACCAATACCCCAATGAGGATACAGAACATTT
CCATGAGTCCAGAAATTCTCTTATCTTTCTTCCAGACAATTTCTCTATCC
CTGAGCCAACAACTGTTTGATTTTCATCACCATGGGTCATGCATTTCTTT
GCANGGTTTTTTTTN

NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTTTCCACAGCCTGGGCCCCAGTG
TGCTGCGCCAGCACAGGTCAGATACAGGCAGTCCCAGACTTCTGATGCTC
AGCAGTGGAATGTTAGAAGCTGGGAGCCAGGAGCCTTTAGGATTAGGCAT
TTATAACTATGGAGTTGCACTCTCCTCACCTCCCCCAACCCCCATAGCAG
AGCTCAGATGCCAGAGAACCCTGTCCAGCAGACTCAGTGTACAAATGGGT
GAACCAAGGCCCATGAGTGTCTCACCCAAGGTGAGTCTGAGACAGCCCTC
CCTACAAGCTCCCCATCACCCCCCCCCACACACACACACACACACACACA
CCTGTGGTTGTACACCATGCTTTTCAAACTGTGCTCCACAGGCCACTGGG
GAACCTTGCCTGGATGGCAGCAGTAAAGGTGGCTGGAGGGATCCCCAGGT
CCCCTTCAATCACAGAGGTCTGTTTTTAACCTCATCTTCATGGGGCATAG
AGGAATTTTTGTCAAAATTGCCTTTTCTACCCCACCCTGAAAAATCACAA
CAAAGAAACCCCTGTTCACTGCATAGCCATGGGGAACAGCTGGGTGATGG
GAAGCCGGCATGTTGCACCCCACGGGCTTGGGACCTCTGTCAGGGTTCTA
CAGGGCATTCATTAGGTGTGACTTCTCAGAACCAAGTGGGCGATTAAAGC
TGCGTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a17.b1 MSMg01no489_a17.b1 CHROMAT_FILE:
MSMg01no489_a17.b1 PHD_FILE: MSMg01no489_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:08 2005
         (611 letters)



>mm_chr4_106945000_106946011
          Length = 1012

 Score = 1065 bits (551), Expect = 0.0
 Identities = 603/635 (94%), Gaps = 24/635 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctaggattaaaggcgtg 60
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 991 tggcctcgaactcagaaatcctcctgcctctgcctcccaagtgctgggattaaaggcgtg 932

                                                                       
Query: 61  tgccaccacgcccggctagtactttttcttaactgacaaatattctcttgtaaaatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tgccaccacgcccggctagtactttttcttaactgacaaatattctcttgtaaaatcctg 872

                                                                       
Query: 121 aaagagagctgatgccctcccatctaaaaggcttcagcagtcccctagtgacgaccagcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 871 aaagagagctgatgccctcccatctaaaaggcttcagcagtcccctagtgacgatcagcc 812

                                                                       
Query: 181 caacctctttcgtcccaccttacaacatcccccatcactgcttccacagccagctgcttg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagcctctttcgtcccaccttacaacatcccccatcactgcttccacagccagctgcttg 752

                                                                       
Query: 241 aggctctcatacacat-----------------------catcagacacacacgtc-ata 276
           ||||||||| ||||||                       ||||||||||||||||| |||
Sbjct: 751 aggctctcaaacacatcatcagacacacgtctacacttacatcagacacacacgtctata 692

                                                                       
Query: 277 cctatatcagacaatgagctctcttgaccccaaagtccttctgccttttgtgaaggttta 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cctatatcagacaatgagctctcttgaccccaaagtccttctgccttttgtgaaggttta 632

                                                                       
Query: 337 tggtcccttctctaattcagcagatgcactctacttgcttcagagcatttgtgcccactc 396
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tggtcccttctctaactcagcagatgcactctacttgcttcagagcatttgtgcccactc 572

                                                                       
Query: 397 tgctttgatgtcccctataggctcagatacttgcgtttctctatttttatgtccctaata 456
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgctttgatgtcccctacaggctcagatacttgcgtttctctatttttatgtccctaata 512

                                                                       
Query: 457 actattatagcagggggctcatagtagtatataaacaatgtttgctgaaaaaaaaatgaa 516
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actattatagcaggggactcatagtagtatataaacaatgtttgctgaaaaaaaaatgaa 452

                                                                       
Query: 517 gtttcaaatatctcacgattcactagggtgaccaataccccaatgaggatacagaacatt 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtttcaaatatctcacgattcactagggtgaccaataccccaatgaggatacagaacatt 392

                                              
Query: 577 tccatgagtccagaaattctcttatctttcttcca 611
           |||||||||||||||||||||||||||||||||||
Sbjct: 391 tccatgagtccagaaattctcttatctttcttcca 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space:   602202
Effective search space used:   602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_a17.g1 MSMg01no489_a17.g1 CHROMAT_FILE:
MSMg01no489_a17.g1 PHD_FILE: MSMg01no489_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:08 2005
         (574 letters)



>mm_chr4_106757543_106758516
          Length = 974

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%), Gaps = 1/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttccacagcctgggccccagtgtgctgcgccagcacaggtcagatacaggcagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tgctttccacagcctgggccccagtgtgctgcgccagcacaggccagatacaggcagtcc 260

                                                                       
Query: 61  cagacttctgatgctcagcagtggaatgttagaagctgggagccaggagcctttaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacttctgatgctcagcagtggaatgttagaagctgggagccaggagcctttaggatt 320

                                                                       
Query: 121 aggcatttataactatggagttgcactctcctcacctcccccaacccccatagcagagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcatttataactatggagttgcactctcctcacctcccccaacccccatagcagagct 380

                                                                       
Query: 181 cagatgccagagaaccctgtccagcagactcagtgtacaaatgggtgaaccaaggcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatgccagagaaccctgtccagcagactcagtgtacaaatgggtgaaccaaggcccat 440

                                                                       
Query: 241 gagtgtctcacccaaggtgagtctgagacagccctccctacaagctccccatcacccccc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgactcacccaaggtgagtctgagacagccctccctacaagctccccatcacccccc 500

                                                                       
Query: 301 cccacacacacacacacacacacacacctgtggttgtacaccatgcttttcaaactgtgc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cc-acacacacacacacacacacacacctgtggttgtacaccatgcttttcaaactgtgc 559

                                                                       
Query: 361 tccacaggccactggggaaccttgcctggatggcagcagtaaaggtggctggagggatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccacaggccactggggaaccttgcctggatggcagcagtaaaggtggctggagggatcc 619

                                                                       
Query: 421 ccaggtccccttcaatcacagaggtctgtttttaacctcatcttcatggggcatagagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaggtccccttcaatcacagaggtctgtttttaacctcatcttcatggggcatagagga 679

                                                                       
Query: 481 atttttgtcaaaattgccttttctaccccaccctgaaaaatcacaacaaagaaacccctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttttgtcaaaattgccttttctaccccaccctgaaaaatcacaacaaagaaacccctg 739

                                             
Query: 541 ttcactgcatagccatggggaacagctgggtgat 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcactgcatagccatggggaacagctgggtgat 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |