BAC Information

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BAC

Clone NameMSMg01-489B09
Chromosome4 (Build37)
Map Location 85,097,454 - 85,098,069
singlet/doubletsinglet
Overlap genenone
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489B09.T7 (MSMg01no489_b09.b1)MSMg01-489B09.TJ (MSMg01no489_b09.g1)
ACCAG567655AG567656
length7551,163
length of high quality
(start - end)		618 (55 - 672)---
definitionCHROMAT_FILE: MSMg01no489_b09.b1 PHD_FILE: MSMg01no489_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005CHROMAT_FILE: MSMg01no489_b09.g1 PHD_FILE: MSMg01no489_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXNCGCGGAATTCTTCACTTACAGAATATCAAAATAGTCAATATTCACTA
ACTTCTATCATTCTGCTCAGGTTTCTGCCTTCCTTCCTGATGAAGTATGG
TGGGTCCCAGGAACATCTAGGTTAGACCCTTCCCCCACTAATCCCCTGCC
TGCCAAGTTCACTTGGGCCACAGCCAGCAGAAGTGAGCTGCACACTTTTC
CCTGCCCTCCATCATCTGGTCCACAGGTCTCCCTGCCTTCCTGAGGTAAT
ATGTGGAGCCCCAGGAACGTTCATGTCCATTTTTGACATAGCAGTGACAA
GCAGCATGCTGTTCCCTGGAAACACTGCCTTCCTACCTGAACAGTCCGAT
TGTGATCAGGAACATCCAGACATCATGGACACAAAGATGGCTAAAGGTCA
GTATAAAAACAATCAACAAAAGCCAGGGCAATAAGACACTGCCAGAGCCC
AGTTATCTTACTACAGCAAGCTGTGGATGTCCTAAGACAGTCAAAGCACA
AGATAACCTTAAATCCAATTCTGTAAAGATGGTAGAGATCTTTGAAGAGG
AGACGAATCAATCCCTCAAAAAAACACAGAAAAATACAATCAAACAAGTA
AAGGAAATGGATAAAACTGTTTAAGACTGANNAATAGAAATAAAAACAGT
AAAGAAGACACAAACTGAGGGAATCTTGGAAATGGAAAACCCTAGGAAGA
GATCA

GTGTGTGTTGTTTCCTGGATCGAACCGGAGATATAACGGAAGCGAGGATT
TCTTTTTCAGTATCCAGGANAGAATTAGCGAGATTTGTTCTGTATCCTTA
TAATTAGTAGATTTATAGCCTCCCCTCCACAATCTATCTTCTCTCTTTCT
TTTAATTTGATGATATCACTCAATAGACGGATAACATACCCGCATAATCT
GACATAAGTAAGATTATTACCCCGCCCCAACCCGTCCGTCATTCTATGGT
TCTAATTGTAATTATATCCGCCTCTTCTCACTTACTTTGTGCGAGCGCGA
GAGAGTTAGATGAAACTATATGACGAACAGAGCCGCTCGTACTCACGATT
CAATATCACTTGCTTATCACATATCATTTTATCTACTACAGACAGTACTG
TTCCTTTATCATCATACTGCCGCGTCGTGTTCGTCATCGTTGTGGTCTCG
TCTCGTGTTCCCTTTTCGTATCGTCGCGCGAGCGCGCGGTACGACACGAC
GCTGGTTATTTTCTGTTATTATTTAAGAGCATGAGATGAGAGACGCTATA
GGCAGACATAAGAATTCGACAGGCACGTGACACTACCGCACGCGATATAC
CGANATGNGAGTCGAGGATATTACTTAAAGATCGAGTCACGTAGTATTTT
AATATTTGACTTAGCCGCCATCGCAGCGTATGATATAGCGTACGACGTAG
AACGAGATACATTATCTCTACTAACTACGAAATTGGTGTCGTATCATATT
ACGCGCACCACCCGATCGTATGTGCGGTTGAGCGAGAAGAGTATATGCTA
CATCTTATACACTAATATGATATTAGTTATCTATCGAATACGGGCAACAC
AACTTTCTCAGATCACGTAGACACAGCTCCGTATATTATAGTCTCTATTC
TAGATCACTATTCATCGACCGCACCCCCGCCGATATTATTAATATTATAT
ATTTNTATTATCGTATATGATAATACAGTAGACAACGCCGACGTATCATA
TACTACGTATATGTATTATGATATATATCGGCACGGCCGTGAAAATTGGA
ATATATATTACGTACGCCATGATTCGTCANTGACAATCGATAGGCGAATC
GGCTGACGTCCGCTAACACTATAAAACAGCCAGTNTAGTACATNGATCTG
CCCTATAGTCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_b09.b1 MSMg01no489_b09.b1 CHROMAT_FILE:
MSMg01no489_b09.b1 PHD_FILE: MSMg01no489_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:11 2005
         (618 letters)



>mm_chr4_85097251_85098268
          Length = 1018

 Score = 1106 bits (572), Expect = 0.0
 Identities = 605/616 (98%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcttcacttacagaatatcaaaatagtcaatattcactaacttctatcattctgct 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcacttaaagaatatcaaaatagtcaatattcactaacttctatcattctgct 263

                                                                       
Query: 64  caggtttctgccttccttcctgatgaagtatggtgggtcccaggaacatctaggttagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caggtttctgccttccttcctgatgaagtatggtgggtcccaggaacatctaggttagac 323

                                                                       
Query: 124 ccttcccccactaatcccctgcctgccaagttcacttgggccacagccagcagaagtgag 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccttcccccacttatcccctgcctgccaagttcacttgggccacagccagcagaagtgag 383

                                                                       
Query: 184 ctgcacacttttccctgccctccatcatctggtccacaggtctccctgccttcctgaggt 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgcacactttcccctgccctccatcatctggtccacaggtctccctgccttcctgaggt 443

                                                                       
Query: 244 aatatgtggagccccaggaacgttcatgtccatttttgacatagcagtgacaagcagcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 444 aatatgtggagccccaggaacgttcatgtccatttttgacatagcagtgatgagcagcat 503

                                                                       
Query: 304 gctgttccctggaaacactgccttcctacctgaacagtccgattgtgatcaggaacatcc 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 gctgttccctggaaacactgccttcctccctgaacagtccgattgtgatcaggaacatcc 563

                                                                       
Query: 364 agacatcatggacacaaagatggctaaaggtcagtataaaaacaatcaacaaaagccagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agacatcatggacacaaagatggctaaaggtcagtataaaaacaatcaacaaaagccagg 623

                                                                       
Query: 424 gcaataagacactgccagagcccagttatcttactacagcaagctgtggatgtcctaaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaataagacactgccagagcccagttatcttactacagcaagctgtggatgtcctaaga 683

                                                                       
Query: 484 cagtcaaagcacaagataaccttaaatccaattctgtaaagatggtagagatctttgaag 543
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 cagccaaagcacaagataaccttaaattcaattctgtaaagatggtagagatctttgaag 743

                                                                       
Query: 544 aggagacgaatcaatccctcaaaaaaacacagaaaaatacaatcaaacaagtaaaggaaa 603
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 744 aggagacaaatcaatccctcaaaaaaccacagaaaaatacaatcaaacaagtaaaggaaa 803

                           
Query: 604 tggataaaa-ctgttt 618
           ||||||||| ||||||
Sbjct: 804 tggataaaaactgttt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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