NNCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCTGTACCCATTACAATTTAAAATGTACCGGTTTTATCAC
CATTGCTAAGAGTGACGGTAATGTTAGTAGTTACTCTGCAGCCACCACAT
GTAGTGTACTTACCTACTGGGCTGGGATCTGGGCACTTGAAACATCTCAG
TTCTAGGACAGAATCCTTGAAAGAAACTCTGAAGTATTGGGTTATTGATT
TAAGTTATAAAGCAAGCAGATGGACAAGTCTGTTGAGAATTCTTTTTTAA
ATTACACTTTTTTAAGGATCTTGTGAGATGGCTTGGTGGTTAAAAGCTTA
TAATGTGCTTCCAGAGGACTGAATTTGATTCCCAACACCCACATCCATGG
CACACAACACACAACCATCTTTAATTCCAGCTCCAGGGAATCTGATGCCT
CTGGTTTCTGGGCATCTGTGCTCAGATGCACAGACCCACACCTGGTCATA
TGTATACACATAGTTTAAAAAAATGAGAAAAAATTTAAACAACTATGCTT
TGATAATAAGAATAATTCCTGCTTTTTAAAACACATATGCGGCAGCACAT
GAGAAATCATGAATGACACTGGCATGTCAACTCATTCTCATTCATTGTTC
AGAAAAAAAAAAACCCTCACTGTTAACAAATGGTGCATCTTTGTCTAGCT
CCTTGANTATGATCTGTGAAGATAATCTAATAATTTATTAATTAGCANGG
TTTATGGTTCTTATGGTTCT

NNCCGATGCTAGGNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGTGCTAGGATTTTACCCACGTA
CACATACAAATGAACACATCTGAAGAAAACACCTTGCTAGCATACAGCTG
AGTCTAGAGCAGGCAGCGCTGTTTCTGGTCTCAGCTGCTGCTTTTAGATT
CTTGATTAAGTGGCATTGTCCTTTAAATGACCTTGATGTTGTGGGAGTCG
CAGACTGGACTCATCCTTCCTTCAAACTGGGACTGCCAACCAAACGCAAG
GTTCTCGGCCTTTGCACTCTTAACTTCTGAGGCTTCCTCTCACAGTTTCT
GTTTGCTGATTTGTAAATCCACATGATCCAGGATTCTTTGGAGAAATTTC
TTCTCCTGAGGTGAAGTTGTCTGTGAATTCTCTCTGCAAAGGTCCCACAC
AGGCTGCTGGGAAATGGTGTTTTATAAAGTTCTCTGAATCTTGGTGGAGG
AAAAAGCCTACAAGTTCAGGAAGCCACCCCCATTATTCAGGATTCCTTTC
CCAGGACTGCTTCCTGCCTGGCTCCCTCCATCAGATATGCCTCTGCAGCA
GCCAGAGTCAACCTTCACTGCTTAGCCTGAAGATTTCCTTTTTTAACTCT
TTCATGCCAATGGTCATGTTTAGCTCAAAATGAAGTGCAACAGATTAAAA
CCAGTGCAAACTAGCCCAACATGCCTTTACTGTCAGCAAAAGAAGATGTA
AATGCTCGTT

Query= MSMg01no489_d09.b1 MSMg01no489_d09.b1 CHROMAT_FILE:
MSMg01no489_d09.b1 PHD_FILE: MSMg01no489_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:21 2005
         (599 letters)



>mm_chr4_82060218_82061216
          Length = 999

 Score =  857 bits (443), Expect = 0.0
 Identities = 467/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatctgtacccattacaatttaaaatgtaccggttttatcaccattgctaagag 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattctatctgaattcattacaatttaaaatgtaccggttttatcaccattgctaagag 416

                                                                       
Query: 65  tgacggtaatgttagtagttactctgcagccaccacatgtagtgtacttacctactgggc 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 415 tgacggtaatgttagtagttactctgcagccaccacatgtggtgtacttacttactgggc 356

                                                                       
Query: 125 tgggatctgggcacttgaaacatctcagttctaggacagaatccttgaaagaaactctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgggatctgggcacttgaaacatctcagttctaggacagaatccttgaaagaaactctga 296

                                                                       
Query: 185 agtattgggttattgatttaagttataaagcaagcagatggacaagtctgttgagaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agtattgggttattgatttaagttataaagcaagcagatggacaagtctgttgagaattc 236

                                                                       
Query: 245 ttttttaaattacacttttttaaggatcttgtgagatggcttggtggttaaaagcttata 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 235 ttttttaaattacacttttttaaggatcttgggagatggcttggtggttaaaagcttata 176

                                                                       
Query: 305 atgtgcttccagaggactgaatttgattcccaacacccacatccatggcacacaacacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atgtgcttccagaggactgaatttgattcccaacacccacatccatggcacacaacacac 116

                                                                       
Query: 365 aaccatctttaattccagctccagggaatctgatgcctctggtttctgggcatctgtgct 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aaccacctttaattccagctccagggaatctgatgcctctggtttctgggcatctgtgct 56

                                                                  
Query: 425 cagatgcacagacccacacctggtcatatgtatacacatagtttaaaaaaatgag 479
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 55  cagatgcacagacccacacctggtcatatgtatacacatagttaaaaaaaatgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_d09.g1 MSMg01no489_d09.g1 CHROMAT_FILE:
MSMg01no489_d09.g1 PHD_FILE: MSMg01no489_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:21 2005
         (303 letters)



>mm_chr4_81911929_81912631
          Length = 703

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttctgaggcttcctctcacagtttctgtttgctgatttgtaaatccacatgatccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctgaggcttcctctcacagtttctgtttgctgatttgtaaatccacatgatccagg 260

                                                                       
Query: 61  attctttggagaaatttcttctcctgaggtgaagttgtctgtgaattctctctgcaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctttggagaaatttcttctcctgaggtgaagttgtctgtgaattctctctgcaaagg 320

                                                                       
Query: 121 tcccacacaggctgctgggaaatggtgttttataaagttctctgaatcttggtggaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccacacaggctgctgggaaatggtgttttataaagttctctgaatcttggtggaggaa 380

                                                                       
Query: 181 aaagcctacaagttcaggaagccacccccattattcaggattcctttcccaggactgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcctacaagttcaggaagccacccccattattcaggattcctttcccaggactgctt 440

                                                                       
Query: 241 cctgcctggctccctccatcagatatgcctctgcagcagccagagtcaaccttcactgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcctggctccctccatcagatatgcctctgcagcagccagagtcaaccttcactgct 500

              
Query: 301 tag 303
           |||
Sbjct: 501 tag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)