BAC Information

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BAC

Clone NameMSMg01-489E02
Chromosome4 (Build37)
Map Location 105,024,819 - 105,057,519
singlet/doubletdoublet
Overlap geneLOC433742
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b
Downstream geneLOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489E02.T7 (MSMg01no489_e02.b1)MSMg01-489E02.TJ (MSMg01no489_e02.g1)
ACCAG567781AG567782
length734733
length of high quality
(start - end)		609 (52 - 660)649 (85 - 733)
definitionCHROMAT_FILE: MSMg01no489_e02.b1 PHD_FILE: MSMg01no489_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:25 2005CHROMAT_FILE: MSMg01no489_e02.g1 PHD_FILE: MSMg01no489_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,024,819 - 105,025,424)(105,056,869 - 105,057,519)
sequence
TTTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTATCTGCTATTTGTTAGGTAGAGAGATGAGCATGAGA
GATGACCTAAATTCTCTGAGACAATATGAATCCACCCAGCCTGTCGGTGG
CGACTGCCAGCCTCTGTTCAAAGCTTCAGCCAGTGCCCATTATGTCATTA
TGGAGCCTGCAGAAGTGATTACCAATGTTACTTTTCCAGTTCACTGCAGA
GCAGAGGGGGAGAGGTTTTTCACACTGCTGGCGTTTTGTTGGAGCACGGT
GATATGGATCCCAGATGGCTCCCTCGGCAGATGTGGCCCTGCAGAAGTGT
ACTGCTGCTTTACAAGGGATTTAATGAAAACCTGGCGCCCCTCCAGGCTT
GAGTCAATCCTCTGGTGTTCTCAGCTAATACACACAGACTGGTCTGCCAG
TTCCCACCTATAGATGGCGCGGGGGAGGCTGGGGTGAAAAGCTTTTACTT
GAGTAACAAGGCTAAGCCTCTGTGACCCAGTCTACAGGTTGGGGTAGGAG
AGCTGGAACAGGGGCGTGGAGGGACATTGGTAGGAGGGTAGCTCATACTG
AAGACTGTCCAGTTAGCTGAGGGTAGCCCGTACTGGAAAATTTCCAGTTA
GCTATTGTTTAGGCAGGATGATCTGGGGGACGAGGACAAAGATGGCTTTC
CCAGTTGTTTGGGACTCATGGTGTTTTTCTTCCC

NAAAANTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAAAGCCAAGAA
CACTTGATAAAAAGGCAGGTCCGGGGGACTTAAATAAAGCTGTTAAGGTC
CATTAGCGCCTTATTAAGACCTTTTCCCAGATGTAGTCTGAAACAGCCAA
AGAATACAGAATGGAGGAACATTTTTGGAGAGAAAGCATGGATGTGTTCA
ACAGTATTTTATTGAAGGATTAATAAACCTGTCTCCAAGGCTGCATGCTT
GCCTCGTCCCTGAAACTCCAGGTAGGTGGAAGGCCATTTTGAAATTCTAA
ATCCTCCTTGTAAGTTCGGGGGACCCGTTGTGTGAACTTGGGGAATGAAT
TAAGATTTTCAGAACTGCAGGTGGTTTTCCCTGGGAACATTAGAAAATAA
CCTGTGACCTCTGGCGTAGTGTGCTTTGCAGGTGTTAACAAAGGCCAGGC
AAGAAGAGGAGCCACTGTGACCCTCACCCAAAGTAGGCATTCGACAATAT
CCACCCCCTGTTCCTCCCTTTCCCCCTCCAAAGGCATATTGTGATGTGCT
ATTTGTATATTTCATCGTTGTTGAAGTGTAATTTACAAACAGTCAGAGTC
ATTTATTTGGGGCTAAATAGTTATATAGGTTTTGACAAACATATACAGCC
ATGTAAATAAATACCACACTAGAGATAAAGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_e02.b1 MSMg01no489_e02.b1 CHROMAT_FILE:
MSMg01no489_e02.b1 PHD_FILE: MSMg01no489_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:25 2005
         (609 letters)



>mm_chr4_105024616_105025624
          Length = 1009

 Score = 1164 bits (602), Expect = 0.0
 Identities = 605/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttatctgctatttgttaggtagagagatgagcatgagagatgacctaaattc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttatctgttatttgttaggtagagagatgagcatgagagatgacctaaattc 263

                                                                       
Query: 64  tctgagacaatatgaatccacccagcctgtcggtggcgactgccagcctctgttcaaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgagacaatatgaatccacccagcctgtcggtggcgactgccagcctctgttcaaagc 323

                                                                       
Query: 124 ttcagccagtgcccattatgtcattatggagcctgcagaagtgattaccaatgttacttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcagccagtgcccattatgtcattatggagcctgcagaagtgattaccaatgttacttt 383

                                                                       
Query: 184 tccagttcactgcagagcagagggggagaggtttttcacactgctggcgttttgttggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccagttcactgcagagcagagggggagaggtttttcacactgctggcgttttgttggag 443

                                                                       
Query: 244 cacggtgatatggatcccagatggctccctcggcagatgtggccctgcagaagtgtactg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacggtgatatggatcccagatggctccctcggcagatgtggccctgcagaagtgtactg 503

                                                                       
Query: 304 ctgctttacaagggatttaatgaaaacctggcgcccctccaggcttgagtcaatcctctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgctttacaagggatttaatgaaaacctggcgcccctccaggcttgagtcaatcctctg 563

                                                                       
Query: 364 gtgttctcagctaatacacacagactggtctgccagttcccacctatagatggcgcgggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgttctcagctaatacacacagactggtctgccagttcccacctatagatggcgcgggg 623

                                                                       
Query: 424 gaggctggggtgaaaagcttttacttgagtaacaaggctaagcctctgtgacccagtcta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaggctggggtgaaaagcttttacttgagtaacaaggctaagcctctgtgacccagtcta 683

                                                                       
Query: 484 caggttggggtaggagagctggaacaggggcgtggagggacattggtaggagggtagctc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggttggggtaggagagctggaacaggggcgtggagggacattggtaggagggtagctc 743

                                                                       
Query: 544 atactgaagactgtccagttagctgagggtagcccgtactggaaaatttccagttagcta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atactgaagactgtccagttagctgagggtagcccgtactggaaaatttccagttagcta 803

                 
Query: 604 ttgttt 609
           ||||||
Sbjct: 804 ttgttt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_e02.g1 MSMg01no489_e02.g1 CHROMAT_FILE:
MSMg01no489_e02.g1 PHD_FILE: MSMg01no489_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:25 2005
         (649 letters)



>mm_chr4_105056784_105057835
          Length = 1052

 Score = 1174 bits (607), Expect = 0.0
 Identities = 639/651 (98%), Gaps = 3/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcaaagccaagaacacttgataaaaaggcaggtccgggggacttaaataaagctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttctcaaagccaagaacacttgataaaaaggcaggtccgggggacttaaataaagctgtt 677

                                                                       
Query: 61  aaggtccattagcgccttattaagaccttttcccagatgtagtctgaaacagccaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaggtccattagcgccttattaagaccttttcccagatgtagtctgaaacagccaaagaa 617

                                                                       
Query: 121 tacagaatggaggaacatttttggagagaaagcatggatgtgttcaacagtattttattg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tacagaatagaggaacatttttggagagaaagcatggatgtgttcaacagtattttattg 557

                                                                       
Query: 181 aaggattaataaacctgtctccaaggctgcatgcttgcctcgtccctgaaactccaggta 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 aaggattaataaacctgtctccaaggcttcatgcttgcctcgtccctgaaactccaggta 497

                                                                       
Query: 241 ggtgga---aggccattttgaaattctaaatcctccttgtaagttcgggggacccgttgt 297
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtggagggaggccattttgaaattctaaatcctccttgtaagttcgggggacccgttgt 437

                                                                       
Query: 298 gtgaacttggggaatgaattaagattttcagaactgcaggtggttttccctgggaacatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 436 gtgaacttggggaatgaattaagattttcagaactgcaggtggttttccctgggaacttt 377

                                                                       
Query: 358 agaaaataacctgtgacctctggcgtagtgtgctttgcaggtgttaacaaaggccaggca 417
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 agaaaataacctgtgacctctggcatagtgtgctttgcaggtgttaacaaaggccaggca 317

                                                                       
Query: 418 agaagaggagccactgtgaccctcacccaaagtaggcattcgacaatatccaccccctgt 477
           |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 316 agaaaaggagccactgtgaccctcacccatagtaggcattcgacaatatccacccccttt 257

                                                                       
Query: 478 tcctccctttccccctccaaaggcatattgtgatgtgctatttgtatatttcatcgttgt 537
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 256 tcccccctttccccctccaaaggcatattgtgatatgctatttgtatatttcatcgttgt 197

                                                                       
Query: 538 tgaagtgtaatttacaaacagtcagagtcatttatttggggctaaatagttatataggtt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgaagtgtaatttacaaacagtcagagtcatttatttggggctaaatagttatataggtt 137

                                                              
Query: 598 ttgacaaacatatacagccatgtaaataaataccacactagagataaagcg 648
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttgacaaacatatacagccatgtaaataaataccacactagagataaagcg 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1052
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1042
Effective search space:   665838
Effective search space used:   665838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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