BAC Information

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BAC

Clone NameMSMg01-489I03
Chromosome4 (Build37)
Map Location 79,916,387 - 79,916,785
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489I03.T7 (MSMg01no489_i03.b1)MSMg01-489I03.TJ (MSMg01no489_i03.g1)
ACCAG567974AG567975
length729724
length of high quality
(start - end)
650 (80 - 729)402 (323 - 724)
definitionCHROMAT_FILE: MSMg01no489_i03.b1 PHD_FILE: MSMg01no489_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:46 2005CHROMAT_FILE: MSMg01no489_i03.g1 PHD_FILE: MSMg01no489_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGGNNNNNGGTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCATGCTTTACACCAAAATATAAAAGCAATATAC
AGCAAACCAACAGTCACCATCAAATGGAGAGAAACTAGAACCAATTCAAA
TAAAATCAGGGACATGATAAGGCTGTCCAGTCTCTCTCTATTTATTCAAT
ATAGTACTTGAAATTCTAACTAGGGCAATTAGACAAGAAAAGGAGTTCAC
AGGGAAATAAATTGGAAAGGAGAAAGTTAAGATCTCATTATTTTGGGATA
ATAGGAAAGTATATGCAAGTGACCTGAAAAAATTCTACCAGACAACTCTT
ACACCTGATAAAGATCTTCAGGAAAGTTGCTGGATTTAAAATTAACTCAA
ACAAATCAGTTGCTTTGTTTCATATAAATGATAAACAGGCTAAAGAAGAA
ACTAGGGAAATAACATTCATCACAATATCTAAAAATAATCTAAACTATAC
TGATTCAATTCTAATCAAGCAAGTGAAAAACCTGTATGACAAAAACTTCA
TGTCCCTAAAGAAAAAAATTGAAAAGTATCACAGAAGATGGAAAGACATC
CCATGCTTGTGGTTCAGTGAGATTATCAGAGTGAAAAAGTGGATGCTCAC
AGTCAAATATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAA
GTACCCAAGGAGCTAAAGGGATCTGCAAN
NNAACCGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAACATGGGGT
GAACTATAGAAGTTCTAAAAAGGTCATTGTCTCTGCCTCCCAGCTCACTG
TGGAACAGGTGTTGTAACAGGCTCCTGCTACTGTGCGGCACTTTGCATGT
GTTCTTGGGATTAGAGTATGAGATCCCACACTTGTCTAGAGGTCACTTTA
CTCACTAAGTAGTTTCTGCAGACAATTTAACATCTTCAATTACAATAGAT
GAGCCTGGCGTGGTGGCACCCGCCTTTAATCCCTGCACTTGGGAGGCAGA
GGCAGGTGGATTTCTTATTTTGAGGCCAGACTGGTCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACAAAACAA
ACAAATAAACCAAAAATTACAATAGATGATTGTTTCATTGTGTCTATTGA
TTTGTAATTTTTTTCTACATTTTTAGCCTTTCCTTACATTTTCCTTTTAA
GGACTAATAATATTACCCTCCTTTCTCAGCAAAATCCCAGTTATTAGTCT
TATTGATTTTTTCTATTTCTTCCTTATATTCTACTATATAAATCTCTGCT
TTAAAATATTCTGTCCACTTTCTTGGGCTTTGCAATTTTCTCCTGTGAAC
TTAAAATATAAGCATAAGATATTTATTTTGAATTCTTTCTTTTTGAAAAA
AATATCTAAACTTATACATACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_i03.g1 MSMg01no489_i03.g1 CHROMAT_FILE:
MSMg01no489_i03.g1 PHD_FILE: MSMg01no489_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:46 2005
         (402 letters)



>mm_chr4_79916098_79916900
          Length = 803

 Score =  598 bits (309), Expect = e-175
 Identities = 378/403 (93%), Gaps = 10/403 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggccagactggtctacaaagtgagttccaggacagccagggctatacagagaaaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aggccagactggtctacaaagtgagttccaggacagccagggctatacagagaaaccctg 629

                                                                       
Query: 61  tcttgaaaaacaaaacaaacaaataaac--caaaaattacaatagatgattgtttcat-- 116
           || | ||||| ||||||||||| |||||   |||||||||||||||||||||||||||  
Sbjct: 628 tc-tcaaaaaaaaaacaaacaagtaaacaaaaaaaattacaatagatgattgtttcattg 570

                                                                       
Query: 117 tgtgtctattgatttgtaatttttttctacatttttagcctttccttacattttcctttt 176
           |||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct: 569 tgtgtctattaatttgtaaattttttctacatttttagcctttcctttcatttttctttt 510

                                                                       
Query: 177 aaggactaataatattaccctcctttctcagcaaaatcccagttattagtc-ttattgat 235
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |  |
Sbjct: 509 aaggactaataatattaccctcctttctcagcaaaatcccagttatcagtcattaat--t 452

                                                                       
Query: 236 tttttctatttcttccttatattctactatataaatctctgctttaaaatattctgtcca 295
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 451 tttttctatttcttccttatattctactatgtaaatctctgctttaaaatattctgccca 392

                                                                       
Query: 296 ctttcttgggctttgcaattttctcctgtgaacttaaaatataagcataagatatttatt 355
           |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 391 ctttcttgtgctttgcaattttctcttgtgaacttaaaatataaacataagatatttatt 332

                                                      
Query: 356 ttgaattctttctttttgaa-aaaaatatctaaacttatacat 397
           |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 331 ttgaattctttc-ttttgaataaaaatatctaaacttatacat 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 803
Length adjustment: 9
Effective length of query: 393
Effective length of database: 794
Effective search space:   312042
Effective search space used:   312042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)