BAC Information

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BAC

Clone NameMSMg01-489O10
Chromosome4 (Build37)
Map Location 139,010,320 - 139,172,362
singlet/doubletdoublet
Overlap geneZubr1, C79267
Upstream geneCamk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Downstream geneAldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O10.T7 (MSMg01no489_o10.b1)MSMg01-489O10.TJ (MSMg01no489_o10.g1)
ACCAG568267AG568268
length734729
length of high quality
(start - end)
407 (326 - 732)316 (328 - 643)
definitionCHROMAT_FILE: MSMg01no489_o10.b1 PHD_FILE: MSMg01no489_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:19 2005CHROMAT_FILE: MSMg01no489_o10.g1 PHD_FILE: MSMg01no489_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,171,956 - 139,172,362)(139,010,320 - 139,010,635)
sequence
AAAACCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAGAGGA
GCNCGCGGAATCTTTGTACCTCAAAGTGGCTCAGCTTAAGGGAGAAGGCA
CAGTTGCACTGCATCGACGCTCAAAAGTCTGCGTTTGTGGTGTGTGTGGG
GACAATAGAAAAATCGACAGCACCATTCCATGGGTCGGTGGTGGAGGAAG
GAAGGAAGCAGCGGTCCCGCTGGGCCTCCGGAGAAGGGAGGACAGAAGTC
TGTGTCGAGGAGTGGAGCCCACACGGCTCAGTGGGGAGAGGAGGCTGGAC
CCCATCACCAAGACCATCCATGGTGTCGGGCCTCCGTCATCAGCTGACCA
TGGGCTCCACATCCGCCTCCCGCTCCAGGTCTTCCTGGATTTCGTCTGTA
CTTCCTGAGTCACTGCTGCCCACGGAGCTGGGGGACGGTGAATTCCTGCA
TTAGAAACCAAAGCCTTTCAGAGAGCAGCCTGGGGGACCCTAACGGCCCA
GGGCCCGGAGCTCTGGCCGGTCACACCTGTTAAAAAACCTACCCGAAGGG
TCTGGGGTGAGCAAAACTTTTGCCTAGTATGCACAAGGCTCTGGGTTCCA
CTCTCAGCAACAACACAGTGGCGGCTACCCTGAGGGGCTCCTGCTGTGAG
ATCCCTGCAAGGCGCACTTTCTCCCAGTCCCTGTAGGTTCCATAAGCTGC
CTAGGGCTCTTGGCATTCCTTGGGACCTCTACCC
NNNNCCCCGATGAAGTGGGAGTCCTGGNGGTCGCCTGGTCANTACTATGG
GGNNGAACNANAGAATGCCACAAAAGAGGGCNGNGACACTTTAGGGGTCA
CCCAGCCAGTTGACCTGAAGCTTTCTCTGGTGGAGCCAAGGACTTCGGGC
TCTGGCAGTTAAACATCTGTGATTGCCAAGTGCAGAGTGGTGACCAGAGG
CTGTGGGAGGGCTGATCTCAGACCTTAACCTGACCAGATAAAGCAAGTCT
TTTTACGTCTTCTTCTTTTATTAGAAGAAAAGGGGCTCCTGTGTGTGCGC
TTGTGGTATTTAGGGGTTTGTANGTTTGTGCATACATGTGGAGGTCTGGA
GTCAGTTCCCTCCCTTCCCCTTTCTGTGGGTCCCAGGGATTGAACTCAGA
TGAACACACTTGCTCAGCAAGCCCCCTTCTCCCATCTTGTTGGCCCGGGG
GCAGGGAAACGGTTAAATGAGGACATTGCTTAACTTTGTGGTTTCTCATG
TGCATTTGTGTACAGCATGTGGAAGCCCCGGGCTCTTAGATAATCTCCAT
CTTCCCTGATGTGATGAGGCAGGGCCTCCCAGGTGAACCCAGCACTCGCT
GATGTGTTGCCAGTGTGCTTTAGCTCCCTGGTCTCTGCTCCCCAATTGCT
GGATTGTAGAGGAGGTGCTGTGCACATCCAACTTAGATGTTGGACCTAGG
GATCTAACTCATGCCTACATGGCAAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o10.b1 MSMg01no489_o10.b1 CHROMAT_FILE:
MSMg01no489_o10.b1 PHD_FILE: MSMg01no489_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:19 2005
         (407 letters)



>mm_chr4_139171928_139172734
          Length = 807

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgggcctccgtcatcagctgaccatgggctccacatccgcctcccgctccaggtcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcgggcctccgtcatcagctgaccatgggctccacatccgcctcccgctccaggtcttcc 376

                                                                       
Query: 61  tggatttcgtctgtacttcctgagtcactgctgcccacggagctgggggacggtgaattc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 375 tggatttcgtctgtacttcctgagtcactgctggccacggagctgggggacggtgaattc 316

                                                                       
Query: 121 ctgcattagaaaccaaagcctttcagagagcagcctgggggaccctaacggcccagggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgcattagaaaccaaagcctttcagagagcagcctgggggaccctaacggcccagggcc 256

                                                                       
Query: 181 cggagctctggccggtcacacctgttaaaaaacctacccgaagggtctggggtgagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cggagctctggccggtcacacctgttaaaaaacctacccgaagggtctggggtgagcaaa 196

                                                                       
Query: 241 acttttgcctagtatgcacaaggctctgggttccactctcagcaacaacacagtggcggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acttttgcctagtatgcacaaggctctgggttccactctcagcaacaacacagtggcggc 136

                                                                       
Query: 301 taccctgaggggctcctgctgtgagatccctgcaaggcgcactttctcccagtccctgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 taccctgaggggctcctgctgtgagatccctgcaaggcgcactttctcccagtccctgta 76

                                                          
Query: 361 ggttccataagctgcctagggctcttggcattccttgggacctctac 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ggttccataagctgcctagggctcttggcattccttgggacctctac 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no489_o10.g1 MSMg01no489_o10.g1 CHROMAT_FILE:
MSMg01no489_o10.g1 PHD_FILE: MSMg01no489_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:19 2005
         (316 letters)



>mm_chr4_139010120_139010835
          Length = 716

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcatacatgtggaggtctggagtcagttccctcccttcccctttctgtgggtcccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcatacatgtggaggtctggagtcagttccctcccttcccctttctgtgggtcccagg 260

                                                                       
Query: 61  gattgaactcagatgaacacacttgctcagcaagcccccttctcccatcttgttggcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgaactcagatgaacacacttgctcagcaagcccccttctcccatcttgttggcccg 320

                                                                       
Query: 121 ggggcagggaaacggttaaatgaggacattgcttaactttgtggtttctcatgtgcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcagggaaacggttaaatgaggacattgcttaactttgtggtttctcatgtgcattt 380

                                                                       
Query: 181 gtgtacagcatgtggaagccccgggctcttagataatctccatcttccctgatgtgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtacagcatgtggaagccccgggctcttagataatctccatcttccctgatgtgatga 440

                                                                       
Query: 241 ggcagggcctcccaggtgaacccagcactcgctgatgtgttgccagtgtgctttagctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagggcctcccaggtgaacccagcactcgctgatgtgttgccagtgtgctttagctcc 500

                           
Query: 301 ctggtctctgctcccc 316
           ||||||||||||||||
Sbjct: 501 ctggtctctgctcccc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)