Query= MSMg01no490_n07.b1 MSMg01no490_n07.b1 CHROMAT_FILE:
MSMg01no490_n07.b1 PHD_FILE: MSMg01no490_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
(375 letters)
>mm_chr4_86720955_86721729
Length = 775
Score = 710 bits (367), Expect = 0.0
Identities = 373/375 (99%)
Strand = Plus / Minus
Query: 1 cagagttcttgtggttttccacagtgacaaccacagcacccatgattagaaggacaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagagttcttgtggttttccacagtgacaaccacagcacccatgattagaaggacaaatc 516
Query: 61 attagcgatgaccacattttcagttgctttctaactaacacatagcatttcatattgtgc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 attagcgatgaccacattttcagttgctttctaattaacacatagcatttcatattgtgc 456
Query: 121 tgcctggcaaggaataaccttgtgaggttttgtgttcaacaaacagtgacttcatttcca 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcctggcaaagaataaccttgtgaggttttgtgttcaacaaacagtgacttcatttcca 396
Query: 181 ttgcatctaagcctgctacctctgcccctagaatgttttgaactttgctgatctgtatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgcatctaagcctgctacctctgcccctagaatgttttgaactttgctgatctgtatcc 336
Query: 241 tctataactaaatgctatggtgcgttttaaaatgttgcaggcttttaaggttgaaaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tctataactaaatgctatggtgcgttttaaaatgttgcaggcttttaaggttgaaaggga 276
Query: 301 tggtcatgaaaatatctgtgaccctgtaaatacttcccccattaacactcagagcaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggtcatgaaaatatctgtgaccctgtaaatacttcccccattaacactcagagcaaaga 216
Query: 361 catgacattcactga 375
|||||||||||||||
Sbjct: 215 catgacattcactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_n07.g1 MSMg01no490_n07.g1 CHROMAT_FILE:
MSMg01no490_n07.g1 PHD_FILE: MSMg01no490_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
(574 letters)
>mm_chr4_86532464_86533437
Length = 974
Score = 944 bits (488), Expect = 0.0
Identities = 543/580 (93%), Gaps = 31/580 (5%)
Strand = Plus / Plus
Query: 1 attcttactgtagtaatgtgctgacgtttgagcccaacttgaaaccctctttctagtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attcttactgtagtaatgtgctgacgtttgagcccaacttgaaaccctctttctagtctc 254
Query: 61 taggtctgcatgct------ctctctctctctctctctctctctctctctctctctctct 114
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taggtctgcatgctttctctctctctctctctctctctctctctctctctctctctctct 314
Query: 115 ctctctcttcctttcttccttttttctctttctttcttgagagtgatctggtgattctga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctctctcttcctttcttccttttttctctttctttcttgagagtgatctggtgattctga 374
Query: 175 catctcccagagaagggctgtcctgaagccgcgagtctgttctgcattcatttttttttt 234
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagctcccagagaagggctgtcctgaagccgcgagtctgttctgcattcatttttttttt 434
Query: 235 ttttttaattttttttgtgattgtttctagggattggatctgtctacttccatgcaacgc 294
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttttaaattttggttgtgattgtttctagggattggatctgtctacttccatgcaacgc 494
Query: 295 tgagtttcctgggtcagatgcttgatgaacttgccattctgtgggttctgacgtgtgctt 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 495 tgagtttcctgggtcagatgcttgatgaacttgccattctgtgggttctgatgtgtgctt 554
Query: 355 tggccatgtggtttcccaggaggtatttaccaaagatctttcggaatgacaggtaagctt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggccatgtggtttcccaggaggtatttaccaaagatctttcggaatgacaggtaagctt 614
Query: 415 gtgctaaagacttttgctagatgtggttatcaatgtaacacactcatcaagttgccggtg 474
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 615 gtgctaaagacttttgctagatgtggttatcaatgtaacacact--------------tg 660
Query: 475 taacacactcgtcaagcaaattactgccccagtgagctcagctggtggtgcactcctccg 534
| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 t-----------caagcaagttactgccccagtgagctcagctggtggtgcactcctccg 709
Query: 535 atgctagctcatcgtctgccagtttcatgatctgacagga 574
||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atgctagctcatcgtctgccagtttcatgatctgacagga 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
