Query= MSMg01no490_n13.b1 MSMg01no490_n13.b1 CHROMAT_FILE:
MSMg01no490_n13.b1 PHD_FILE: MSMg01no490_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
(415 letters)
>mm_chr4_102795540_102796354
Length = 815
Score = 768 bits (397), Expect = 0.0
Identities = 412/418 (98%), Gaps = 5/418 (1%)
Strand = Plus / Minus
Query: 1 aattctctaaaacagaaaactctaatttctgagagtcaaagaccaaacctagaaaagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aattctctaaaacagaaaactctaatttctgagagtcaaagaccaaacctagaaaagaga 720
Query: 61 ctagatagaatactgtgattatttttacaaaaatcatgatcaaagattcattgtatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctagatagaatactgtgattatttttacaaaaatcatgatcaaagattcattgtatcttc 660
Query: 121 aatgc--aaaaaaaaaaaaaacaaaaaacaaaacaaaaaaaaaaaccttagtgactttgc 178
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 659 aatgcaaaaaaaaaaaaaaaacaaaaaacaaaac-aaaaaaaaaaccttagtgactttgc 601
Query: 179 ccctcaaaacaattctatcaccatttctttaagtgttgccatcactatttaaggaagatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccctcaaaacaattctatcaccatttctttaagtgttgccatcactatttaaggaagatt 541
Query: 239 gttggtaagtcagattcataaaggatggaggaaccaagctaagtgggagtgggggcatca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttggtaagtcagattcataaaggatggaggaaccaagctaagtgggagtgggggcatca 481
Query: 299 tattccaggatgcacacagg-gncataagctttccactgtcctctcctccacacagatga 357
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 480 tattccaggatgcacac-ggtgtcataagctttccactgtcctctcctccacacagatga 422
Query: 358 tgtcactgagacctgcctttcctctcaggatgccactcctctgcagaccacttgaagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtcactgagacctgcctttcctctcaggatgccactcctctgcagaccacttgaagg 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_n13.g1 MSMg01no490_n13.g1 CHROMAT_FILE:
MSMg01no490_n13.g1 PHD_FILE: MSMg01no490_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
(669 letters)
>mm_chr4_102738338_102739406
Length = 1069
Score = 1212 bits (627), Expect = 0.0
Identities = 659/671 (98%), Gaps = 4/671 (0%)
Strand = Plus / Plus
Query: 1 aagaaccagcaaggtggttcattgagtaaaagcatttgctgcacacacccaatgacctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaccagcaaggtggttcattgagtaaaagcatttgctgcacacacccaatgacctga 260
Query: 61 gttccatgtctggaactcacaaaaagctagagacgggagaataatctgaaattctggcta 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcgatgtctggaactcacaaaaagctagagacgggagaataatctgaaattctggcta 320
Query: 121 gctagcccggagaacacagggcagcagaaatgagaaaccctgcctcagtgagttgaaagt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gctagcccggagaacacagggcagcagaaatgagaaaccctgcctccgtgagttgaaagt 380
Query: 181 agagaactgagtcatgacagttgtcctctggatgcatgtgcgcacacatacacacactat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaactgagtcatgacagttgtcctctggatgcatgtgcgcacacatacacacacta- 439
Query: 241 tta--catacatatgaaacaaataaaaatttacaaaagaattgcagcttaagcgctagac 298
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 -tacgcatacatatgaaataaataaaaatttacaaaagaattgcagcttaagcgctagac 498
Query: 299 ttgggctgttacagcatttggtgacttactgggtttgctttattccaggaaaggctgctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgggctgttacagcatttggtgacttactgggtttgctttattccaggaaaggctgctc 558
Query: 359 acgttgaggcctttcgttaagtcacaggagaaagaccagagccgttccagattagccggt 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 559 acgttgaggcctttcgttaagtcacaggagaaagaccagagccgttccaaattagccggt 618
Query: 419 attgttgactgttccgtagctatctctagctctagttccatttccacttcttcttcgtct 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 619 attgttgactgttccgtagctatctctagctctagttccatttccacttcttcttcatct 678
Query: 479 tccttcgtcggctcgtcctctgctaccttaagattttccacttgcaaagtttcttcaggc 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tccttcttcggctcgtcctctgctaccttaagattttccacttgcaaagtttcttcaggc 738
Query: 539 tctccaggttcgtgttcttaagttaagtcagacatgtcattaccctctgcaccaacaggg 598
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 739 tcttcaggttcgtgttcttaagttaagccagacatgtcattaccctctgcaccaacaggg 798
Query: 599 cagagcctgccaaatagcatctctatccctgacacttagtggcattacataccactagat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cagagcctgccaaatagcatctctatccctgacacttagtggcattacataccactagat 858
Query: 659 ctaccggaata 669
|||||||||||
Sbjct: 859 ctaccggaata 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
