BAC Information

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BAC

Clone NameMSMg01-491A08
Chromosome4 (Build37)
Map Location 131,146,330 - 131,146,895
singlet/doubletsinglet
Overlap genenone
Upstream gene2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832
Downstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A08.T7 (MSMg01no491_a08.b1)MSMg01-491A08.TJ (MSMg01no491_a08.g1)
ACCAG569113AG569114
length753769
length of high quality
(start - end)
249 (60 - 308)566 (61 - 626)
definitionCHROMAT_FILE: MSMg01no491_a08.b1 PHD_FILE: MSMg01no491_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:47 2005CHROMAT_FILE: MSMg01no491_a08.g1 PHD_FILE: MSMg01no491_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTAAACACTCACATAGTCAGAAATGCCGCNGGAATCTGGTACTTATTC
GTTATAAGCCTCAGCTTCAGGAAGAGACTCCATCTCAAAGGGGTGGGTAG
AGAGCAATAGAGGAAGATACTGGATACCCTCTTCTGACCTCTATGTAATT
CCTACACACATGCTCATACCCCCCCCCAACACACACACCACCTAATCCCA
CACATACACACGTACTACAAACTCACACACATAGATTCTACATGTACCAC
ACACCACACAACAGTATATATACACACTACACACACACCATATACACACG
CCATCAGATTTTTTTTCACATTTGCATACACACAAACACATATGCACATA
TACACAACACCACCCACACACTTACACATGCATATACTCAAACATATACA
ACACACACAAATACACACATAGACACACACAGCACACATACACACAGAGA
CATTCAAGTAAATAAATACATCTTTTTTAAAAAGACATTAGAAGAAAACT
GACCAATCCAATGGAAAGTTGGTAGAAGAATGGAAAATCAAGGGAAAGGC
TGACATCTATAAAATAGAAATCAGAAAGCCAACGTGGAGATCAATAGAGC
CAAAGTTAGTTCCTTAAGAAAGTTAATAAAGTTGATAAAGCTGTAGGCAG
ATGGTTTAAGAATAAAATAGAAAGATAAAGGTTAAAACGAGCAGTGTCAG
ATGGAGACGCCCAGCAGCACTTGGAGTCAGAATACACAGGAAGGGATACA
ACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCTCTCAAGTCAGGGCAGTAATCAGCTTCCTGGCTTTTA
GCACTGTGTGATAGATGAGTGTCATACAAACACACTGGCTTGGGTTCCCA
TTTCCTGTGGCTCCAGCATTACACCTGGCAATGTGCATAGGCAGCCATGC
AGAACACGACTTTGTTTATTCCTGTCCCTGTGGTTCCTGTGTATTAGACA
AATACCAAATCATTTGCCATCCTGTGCATTGCAGTGCTGGGGTGGTGTAA
GCACTGGCATGGGCATTGATGTGGAATCACTACATTGTATCCCTGTCATA
TACAAGATCATCCACCTGTAGAATCGCTAGAGTGTATCCAGGACACATAC
AGGATCACCAGCAGATGCTGCCAAATGGTCTGTAGAGTTGCCTTTGCGGT
TTATATTCCCACCAGCAGTGTCCAGAGCCACATTTTGTCCCCAGATTGCC
TACTCCACATCCTCGTCTGCCTGTATCAGCTCCTTTTGGTCCAGATGTTC
AGCTCTATGAGTCTTCACCCCTGGAACATTGATGTAGGAGGGTACCTTGC
TCCCATGTGCTGACTTTGGCTCCTTTCANGGCGTGGCCTCAGAGATGCAC
ACTCAAGCTGCCCTGTGATGTCATCATGGCCCAACATCAAATTGTTGCCC
ACATGGGGCCTTCCTTGCCAGAAAAAGCGCTCATGCCTGTGACCTACCTA
ACTGTGGGACCTGGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a08.g1 MSMg01no491_a08.g1 CHROMAT_FILE:
MSMg01no491_a08.g1 PHD_FILE: MSMg01no491_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:47 2005
         (566 letters)



>mm_chr4_131146130_131147095
          Length = 966

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctctcaagtcagggcagtaatcagcttcctggcttttagcactgtgtgatagatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgctctcaagtcagggcagtaatcagcttcctggcttttagcactgtgtgatagatgagt 707

                                                                       
Query: 61  gtcatacaaacacactggcttgggttcccatttcctgtggctccagcattacacctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtcatacaaacacactggcttgggttcccatttcctgtggctccagcattacacctggca 647

                                                                       
Query: 121 atgtgcataggcagccatgcagaacacgactttgtttattcctgtccctgtggttcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgtgcataggcagccatgcagaacacgactttgtttattcctgtccctgtggttcctgt 587

                                                                       
Query: 181 gtattagacaaataccaaatcatttgccatcctgtgcattgcagtgctggggtggtgtaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 586 gtattagacaaataccaaatcatttgccatcctgtgcattgcagtgctgggccggtgtaa 527

                                                                       
Query: 241 gcactggcatgggcattgatgtggaatcactacattgtatccctgtcatatacaagatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcactggcatgggcattgatgtggaatcactacattgtatccctgtcatatacaagatca 467

                                                                       
Query: 301 tccacctgtagaatcgctagagtgtatccaggacacatacaggatcaccagcagatgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tccacctgtagaatcgctagagtgtatccaggacacatacaggatcaccagcagatgctg 407

                                                                       
Query: 361 ccaaatggtctgtagagttgcctttgcggtttatattcccaccagcagtgtccagagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccaaatggtctgtagagttgcctttgcggtttatattcccaccagcagtgtccagagcca 347

                                                                       
Query: 421 cattttgtccccagattgcctactccacatcctcgtctgcctgtatcagctccttttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cattttgtccccagattgcctactccacatcctcgtctgcctgtatcagctccttttggt 287

                                                                       
Query: 481 ccagatgttcagctctatgagtcttcacccctggaacattgatgtaggagggtaccttgc 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccagatgtttagctctatgagtcttcacccctggaacattgatgtaggagggtaccttgc 227

                                     
Query: 541 tcccatgtgctgactttggctccttt 566
           ||||||||||||||||||||||||||
Sbjct: 226 tcccatgtgctgactttggctccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)