BAC Information

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BAC

Clone NameMSMg01-491C22
Chromosome4 (Build37)
Map Location 125,405,585 - 125,406,109
singlet/doubletsinglet
Overlap genenone
Upstream geneSf3a3, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491C22.T7 (MSMg01no491_c22.b1)MSMg01-491C22.TJ (MSMg01no491_c22.g1)
ACCAG569237AG569238
length756762
length of high quality
(start - end)		617 (40 - 656)525 (69 - 593)
definitionCHROMAT_FILE: MSMg01no491_c22.b1 PHD_FILE: MSMg01no491_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:00 2005CHROMAT_FILE: MSMg01no491_c22.g1 PHD_FILE: MSMg01no491_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAAACCCCTCTCTATTTAAAGGCTGAGAAGTGCGCTGGAGACAGCTCAGT
TGGTCAAGTGCTTGCTATGCATGCGTGCGCACTGAATAGGACCACCAGCG
CTCAGAAACAGTCAGGCATGCCGGTGTGCACTTGCAGTCTCAGTGCTGGG
GACGGAGTCGCAGGTAGATTTCCGAGGATTGCTGGCCAGCTGGCCTAATT
GGGGAGCCTCAGATCCAGGTGTGAGACTGTCACAAAAACCACGGTGGACA
GCTCCTGAGGAATGGTGATATCCAAGAATGACCTCTGGCTTCCACACTGA
CACACACATTCATGCACACCCACACCCACACACATGTGTACCCGCACGCA
TATATAAAAGCTGAATAGTACTCCATCATGTATGCATTCCATATTTTATT
TACCCATTCAGCCACTGATGGACACTCTGTATGAGTCTACATTCTGGCTA
CTTGGATCAACGTGAAGGTGCAGACACTGTTTTGAGAATTTGGTTTCAAT
ATCACGAGATGTAGAAATGCCACATCAAATGGTAGTTCTTTTTAAAATTT
TTTTGAGGAACTTCTGTAACTTTAATTTTTTTTCAAGATTTATTTATATC
TAAGTACACTGTAGCTGTCTTCAGATGCACCAGTAGAGGGCTCAGATCTC
ATTATGGATGGTTGTGAGCCAACATGTGGNTGCTGGGATTCCAACTCANG
ACTTCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGTCCGTCTGTGTGAAGCCGGGCTCCCAGCG
CCACTCCTCCGGAGGCGCTCCAGGATTCCCCTCCACACCATGCACCTGAA
AGTTCTGAAATGCGCTTCCTTTCTGCCTCCCACACTTCTGAGAGAAGCTA
CTTTGTAACCATTTGGAACCACGCAAGTCTAGGTTTGAGTCCTATCACTG
ACCACTAACTAAAATGTGCTGTCCTAAGCAGGTGGTTTAGCCCTTCTGAC
CCACCGTGTCTCTGTGTGGAAAATGGGAATAAGGAAGTGGCTTGGAGGAA
TTCCTTCAGATGATCTGTGAGCACGTAAATGCCACGCCTGCACGCTGTGG
CATTCAGTAATTGATGGCTATTGTGCTCAGCTCTAAGACAAAGAAAAGAT
GAGGCTGAGGTCAGAGCTTAGTGCAAGAGCTTCAGTTGCCATCTCAGCAC
CAAAAAAGAGAGGAAGAGCCCAAGGAGAAAGGTGGGGATGGCGGGGAGAT
GCCCCTCCATTGGTAAAGTGTACCAACTTGAGGATCTGAGTTCCGATCCC
CAAACCTCCATCCTCTCATGTAAAAAGCCAAGAGTTTTGGTACATGGCTG
CATTCCACTGGGGAGACTCAAACAGTCGGTCGGATCTCTGGACCTCACTG
GCCAGCTAGCCTAACTGAACTGCAGAGTCCCAGGACTTATTGAGAGAATC
TATCTCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_c22.g1 MSMg01no491_c22.g1 CHROMAT_FILE:
MSMg01no491_c22.g1 PHD_FILE: MSMg01no491_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:01 2005
         (525 letters)



>mm_chr4_125405385_125406309
          Length = 925

 Score =  984 bits (509), Expect = 0.0
 Identities = 521/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtccgtctgtgtgaagccgggctcccagcgccactcctccggaggcgctccaggattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtccgtctgtgtgaagccgggctcccagcgccactcctccggaggcgctccaggattc 260

                                                                       
Query: 61  ccctccacaccatgcacctgaaagttctgaaatgcgcttcctttctgcctcccacacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctccacaccatgcacctgaaagttctgaaatgcgcttcctttctgcctcccacacttc 320

                                                                       
Query: 121 tgagagaagctactttgtaaccatttggaaccacgcaagtctaggtttgagtcctatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagaagctactttgtaaccatttggaaccacgcaagtctaggtttgagtcctatcac 380

                                                                       
Query: 181 tgaccactaactaaaatgtgctgtcctaagcaggtggtttagcccttctgacccaccgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaccactaactaaaatgtgctgtcctaagcaggtggtttagcccttctgacccaccgtg 440

                                                                       
Query: 241 tctctgtgtggaaaatgggaataaggaagtggcttggaggaattccttcagatgatctgt 300
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 441 tctctgtgtggaaaatgggaataagtaagtggcttggaggaattccgtcagatgacctgt 500

                                                                       
Query: 301 gagcacgtaaatgccacgcctgcacgctgtggcattcagtaattgatggctattgtgctc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcgcgtaaatgccacgcctgcacgctgtggcattcagtaattgatggctattgtgctc 560

                                                                       
Query: 361 agctctaagacaaagaaaagatgaggctgaggtcagagcttagtgcaagagcttcagttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctctaagacaaagaaaagatgaggctgaggtcagagcttagtgcaagagcttcagttg 620

                                                                       
Query: 421 ccatctcagcaccaaaaaagagaggaagagcccaaggagaaaggtggggatggcggggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatctcagcaccaaaaaagagaggaagagcccaaggagaaaggtggggatggcggggag 680

                                                        
Query: 481 atgcccctccattggtaaagtgtaccaacttgaggatctgagttc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcccctccattggtaaagtgtaccaacttgaggatctgagttc 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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