CCGCTAAACGACNCACATAGTCCGTATTCGGCGGAANCATAANGGCCTAC
ATAAAATAAAGAAAATATCGAATGAGTATGAAGTGTCTCTGGTAGAGTTT
GCCCAGGCTGTTTGGCATAACTTCACTGTAGCCTTGGTTCTGATACTTCA
CAGGCCTACTTTGCATTGTGCACTTTGCAACACATTATGCAAAAATACAT
GTTCTTTGAAACACTTGGCTCAAATTCTAGACTCCATTATGTATTATGAA
TTATAATGTTTTTACTGTAAATTCAAAGGGTTTAATTCAAACAAAATTGA
CTTTCATTTCTTATGTAAGATTTAATGCCTAAAAAGGAAAACCACCTGGC
TAAGGCAGCGCTTTTATGTAACTCTAGCACTAAGAATTTGAATCCATTTT
TCAACGAAAGGAAAGCTAACCATAAGTTTGAGGCTAGCCTAGACTAAGTA
GCAAGTCTGTTACCTCACTAAAAGTCAATGCTGTAGTGTTGATCCAAGTA
CATTCCTTTCCACACCATTAAATAGGTAAAAGGTAGCAAAACAAGGAAGA
GAAAGGAGCAAAAGGACCACAGATTTCAATAGTTCTTCCATAAAATTTAT
AAATATTGTTAATCTTTAAAATGAACATACTTTGTACATAGGGATACATT
GCCATCTTACCTGACCAATTAAGCTGGAGAAAACAAAAACCCCAGAGAAA
AATTCAAGAATTGGAAAACAATTTCAAATGAAGTCTGTGGCTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
ATTCCCGAATTCTCATTTCAAGCCAAGTATCCAGATGTTATAGTGGTACT
GGTCAGAAGTTTACACTTGAGAGCCATGGCTTTTATTCAGAGGAGCATCA
AACCAATGTAAAGAATAAAGGACTTATGACAGTTCTTATTAAAAGCACCT
TGCAGTTGCCCTTATGAGCCTCAAACTATGCTGTTTTCATTTAATTAATA
AAAAGTCAGTATGAAGGGTCTAAGTAAAATGAACGGGCCCAGGACAATAC
CTGTATGTGTGCTTTCTGAAGGCTGCACTGATAAATGACTTTTGAAGATT
TTTACTTCCTTGTATAGATTCCTGAATCTTACTTATTACAGCACAATAGT
TAGAAACAGAAAGACAAACCCAACCCCAATTCCAGTTCACCATCCCTAGG
CCTCATTGATAGAACAGAAAAAAATAATAGTGCCTTCTTCCTCCAGTCAG
TAGATCAACTCCAGCATATGGAACAGGCCAAGTAAACATTTGCTATAAAT
AAGTATTAGCATCTCTTCTGTATAGCCCCCAAGAGGCCTCTCCAATATTG
TGCAAGACTTCCACCTCTGTCAAAGTGTCTTCTATTGACTGCAAATTGCC
TCAGAGCTGTATATCATTAACAGGACTGTCTACAAAAGTAAATTTCCTCT
TGCTATTCAGCCCCTGTCCTGGATACTCTTGTCCATGTACACTACCCCTT
ACAAG

Query= MSMg01no491_j09.b1 MSMg01no491_j09.b1 CHROMAT_FILE:
MSMg01no491_j09.b1 PHD_FILE: MSMg01no491_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:32 2005
         (304 letters)



>mm_chr4_19342774_19343477
          Length = 704

 Score =  549 bits (284), Expect = e-161
 Identities = 299/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttaatgcctaaaaaggaaaaccacctggctaaggcagcgcttttatgtaactctag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 agatttaatgcctaaaaaggaaaaccacctggttaaggcagcgcttttatgtaactctag 445

                                                                       
Query: 61  cactaagaatttgaatccatttttcaacgaaaggaaagctaaccataagtttgaggctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactaagaatttgaatccatttttcaacgaaaggaaagctaaccataagtttgaggctag 385

                                                                       
Query: 121 cctagactaagtagcaagtctgttacctcactaaaagtcaatgctgtagtgttgatccaa 180
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 cctagactaagtagcgagtctgttccctcactaaaagtcaatgctgtagtgttgatccaa 325

                                                                       
Query: 181 gtacattcctttccacaccattaaataggtaaaaggtagcaaaacaaggaagagaaagga 240
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtacattcctttccacgtcattaaataggtaaaaggtagcaaaacaaggaagagaaagga 265

                                                                       
Query: 241 gcaaaaggaccacagatttcaatagttcttccataaaatttataaatattgttaatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaaaaggaccacagatttcaatagttcttccataaaatttataaatattgttaatcttt 205

               
Query: 301 aaaa 304
           ||||
Sbjct: 204 aaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_j09.g1 MSMg01no491_j09.g1 CHROMAT_FILE:
MSMg01no491_j09.g1 PHD_FILE: MSMg01no491_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:32 2005
         (592 letters)



>mm_chr4_19180785_19181776
          Length = 992

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcaagccaagtatccagatgttatagtggtactggtcagaagtttacacttgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcaagccaagtatccagatgttatagtggtactggtcagaagtttacacttgagag 260

                                                                       
Query: 61  ccatggcttttattcagaggagcatcaaaccaatgtaaagaataaaggacttatgacagt 120
           ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ccacggcttttattcagaggagcgtcaaaccaatgtaaagaataaagaacttatgacagt 320

                                                                       
Query: 121 tcttattaaaagcaccttgcagttgcccttatgagcctcaaactatgctgttttcattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttattaaaagcaccttgcagttgcccttatgagcctcaaactatgctgttttcattta 380

                                                                       
Query: 181 attaataaaaagtcagtatgaagggtctaagtaaaatgaacgggcccaggacaatacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaataaaaagtcagtatgaagggtctaagtaaaatgaacgggcccaggacaatacctg 440

                                                                       
Query: 241 tatgtgtgctttctgaaggctgcactgataaatgacttttgaagatttttacttccttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtgtgctttctgaaggctgcactgataaatgacttttgaagatttttacttccttgt 500

                                                                       
Query: 301 atagattcctgaatcttacttattacagcacaatagttagaaacagaaagacaaacccaa 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagattcctgaaccttacttattacagcacaatagttagaaacagaaagacaaacccaa 560

                                                                       
Query: 361 ccccaattccagttcaccatccctaggcctcattgatagaacagaaaaaaataatagtgc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccaatgccagttcaccatccctaggcctcattgatagaacagaaaaaaataatagtgc 620

                                                                       
Query: 421 cttcttcctccagtcagtagatcaactccagcatatggaacaggccaagtaaacatttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcttcctccagtcagtagatcaactccagcatatggaacaggccaagtaaacatttgc 680

                                                                       
Query: 481 tataaataagtattagcatctcttctgtatagcccccaagaggcctctccaatattgtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataaataagtattagcatctcttctgtatagcccccaagaggcctctccaatattgtgc 740

                                                               
Query: 541 aagacttccacctctgtcaaagtgtcttctattgactgcaaattgcctcaga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagacttccacctctgtcaaagtgtcttctattgactgcaaattgcctcaga 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)