Query= MSMg01no491_l11.b1 MSMg01no491_l11.b1 CHROMAT_FILE:
MSMg01no491_l11.b1 PHD_FILE: MSMg01no491_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:42 2005
(706 letters)
>mm_chr4_64936041_64937147
Length = 1107
Score = 1249 bits (646), Expect = 0.0
Identities = 690/706 (97%), Gaps = 5/706 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaagcttttgcatgcacacaggtgtaggcacattgtgcccatttattagaa 63
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 907 ggaattcaaaaagctcctgcatgcacacaggtgtaggtacattgtgcccatttattagaa 848
Query: 64 agcacacaagcttgatctttttatatcatttttttcttcatcaacttttaacggagagcg 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 847 agcacacaagcttgatctttttatatcatttttttcttcatcaac-tttaacggagagcg 789
Query: 124 ctctagacatccctgccttacctttgggccagctgaaggcttcataacttattcttctgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctctagacatccctgccttacctttgggccagctgaaggcttcataacttattcttctgt 729
Query: 184 aaactagtgaaaactttacaagctgattcataagatgactggcatgtttgaatgtgaaca 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 728 aaactagtgaaaactttacaagctgattcataagatgactgccatgtttgaatgtgaaca 669
Query: 244 tatagtacgaagttctggatacagaactggcaccctgagagcacttcacattctgacatg 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tatagtatgaagttctggatacagaactggcaccctgagagcacttcacattctgacatg 609
Query: 304 gtcattaataaaaacttattgcagttgtgttgccatttattattgtggtgtggtcactcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtcattaataaaaacttattgcagttgtgttgccatttattattgtggtgtggtcactcc 549
Query: 364 tttacttcctccatttacattcaataatctatttttcctttcttgttccttcctcttcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttacttcctccatttacattcaataatctatttttcctttcttgttccttcctcttcct 489
Query: 424 ctctcgtctcctttctgtttcttactccttcacagcctccagtgcttggcttatttggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctctcgtctcctttctgtttcttactccttcacagcctccagtgcttggcttatttggag 429
Query: 484 accatgttaaaagttgttcaactttaactgaaaaaaaa---tagctaaaaagacatacct 540
||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 428 accatgttaaaagttgttcaattttaactgaaaaaaaacaatagctgaaaagacatacct 369
Query: 541 agtgtgttcatcactcctgtgggaagcccgtcatgggggcattcttaacacttgatctct 600
|||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 368 agtgtgttcatcactcctgtgggaagtccgtcatgggggcattcttgacactt-atctct 310
Query: 601 ccacattgttaggggcaaaggagctgattagaacctccaccccactccacattaacctca 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 309 ccacattgttaggggcaaaggagctgattagaacccccaccccactccacattaacctga 250
Query: 661 gtctacccattcctgaggatgagcactaaattattggcaaatggga 706
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtctacccattcctgaggatgagcactaaattattggcaaatggga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1107
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1097
Effective search space: 763512
Effective search space used: 763512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_l11.g1 MSMg01no491_l11.g1 CHROMAT_FILE:
MSMg01no491_l11.g1 PHD_FILE: MSMg01no491_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:43 2005
(656 letters)
>mm_chr4_64776393_64777448
Length = 1056
Score = 1232 bits (637), Expect = 0.0
Identities = 652/657 (99%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 catatttgccctgatttgaggatg-agtcccaggatctgggaaaactcggtataaagact 59
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 201 catatttgccctgatttgaggatgca-tcccaggatctgggaaaactcggtataaagact 259
Query: 60 gtcacaatttagatgactcatactaattgaccattttaaacaaaccatattcttggtgcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtcacaatttagatgactcatactaattgaccattttaaacaaaccatattcttggtgcc 319
Query: 120 atctgactcattccctcctcagggaaatgctaagcaatagaatttggtattaactgacct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctgactcattccctcctcagggaaatgctaagcaatagaatttggtattaactgacct 379
Query: 180 ccttaaactaacgagagacccacagcagctctgtctgacatgaccatggagtagcactta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttaaactaacgagagacccacagcagctctgtctgacatgaccatggagtagcactta 439
Query: 240 aattcaacttctgtgaaccaagtataggcactgagcactgctctccagcagtctcttctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aattcaacttctgtgaaccaagtataggcactgagcactgctctccagcagtctcttctt 499
Query: 300 ggggttttgttaccttgtttcacgtgaagatgctaaaatggacccaaatcggtcaatcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggggttttgttaccttgtttcacgtgaagatgctaaaatggacccaaatcggtcaatcca 559
Query: 360 ctgctggcttcctgtttcccctttgtcttctggaggatgtcagtaccagttcagaaggat 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcctggcttcctgtttcccctttgtcttctggaggatgtcagtaccagttcagaaggat 619
Query: 420 aaatattgtgaatcgggacatgaacatgaattaatattgcctctgagagcatacatataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatattgtgaatcgggacatgaacatgaattaatattgcctctgagagcatacatataa 679
Query: 480 gaatgccccaggctgttttggtaaagcatttgccaccatttgttatctgaagtctggctg 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaatgccccaggctgttttgataaagcatttgccaccatttgttatctgaagtctggctg 739
Query: 540 accaaggctgtcatgctgagaatcttacctaaccttggattacatttgtcctcaagatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 accaaggctgtcatgctgagaatcttacctaaccttggattacatttgtcctcaagatct 799
Query: 600 agacattgttctatactgtcctggagattgataggtaacgaatctagactactgaga 656
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agacatcgttctatactgtcctggagattgataggtaacgaatctagactactgaga 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
