Query= MSMg01no491_p19.b1 MSMg01no491_p19.b1 CHROMAT_FILE:
MSMg01no491_p19.b1 PHD_FILE: MSMg01no491_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:05 2005
(660 letters)
>mm_chr4_151326420_151327479
Length = 1060
Score = 1201 bits (621), Expect = 0.0
Identities = 651/663 (98%), Gaps = 6/663 (0%)
Strand = Plus / Plus
Query: 1 ctacctgaaactgtctcaaaaaactaaagtctaaaaccaaaacgaaaaagtctg--cttt 58
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 201 ctacctgaaactgtctcaaaaaactaaagtctgaaaccagaacgaaaaagtctgtgcttt 260
Query: 59 agagctgccagagacgggccctgttcctgcgcagtgcaccgtgtatacattgtgactgca 118
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agagctgccagagacgggccctgttcctgcgcagtgcaccctgtatacattgtgactgca 320
Query: 119 gttagcagcttgtcggacctacgggaagcccagcttttcccatctgtagcctggggaggg 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagcagcttgtcggacctatgggaagcccagcttttcccatctgtagcctggggaggg 380
Query: 179 gagaacatttgtcagaatgcagcaaaagacagacagacagacagagagtctcttgaagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaacatttgtcagaatgcagcaaaagacagacagacagacagagagtctcttgaagca 440
Query: 239 ctttcctcctgacctgtacactggcttttcaggactgaggggaaattcatgttgtacatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcctcctgacctgtacactggcttttcaggactgaggggaaattcatgttgtacatt 500
Query: 299 gtttgatttttcttttttttt-ccattgcagtgcttagtgatccccaaacaagagctatc 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgatttttcttttttttttccattgcagtgcttagtgatccccaaacaagagctatc 560
Query: 358 tatgatatatacgggaagagaggcctggagatggaaggatgggaggtaagagaagctgag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgatatatacgggaagagaggcctggagatggaaggatgggaggtaagagaagctgag 620
Query: 418 tctacggagtccgcgatgtctgtgagaatgatgaagtacaccaccaccaccaccaccaca 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tctacggagtccgcgatgtctgtgagaatgatgaagtacaccaccaccaccaccac---a 677
Query: 478 gcggccctagggctgtgacagacctggctgtaatgcactgaggtctcatggggtcccatc 537
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 678 gcggccctagggctgtgacagacctagctgtaatgcactgaggtctcatggggtcccatc 737
Query: 538 agacatcagcgagagctgtgcaggggccggcagttccctgtcctcttcctcattcatgta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agacatcagcgagagctgtgcaggggccggcagttccctgtcctcttcctcattcatgta 797
Query: 598 gaactccctctgaagtgcttgtggtgtttgacctcgtgctgtctctccctctgaccctga 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 798 gaactccctctgaagtgcttgtggtgtttgacctcatgctgtctctccctctgaccctga 857
Query: 658 agc 660
|||
Sbjct: 858 agc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_p19.g1 MSMg01no491_p19.g1 CHROMAT_FILE:
MSMg01no491_p19.g1 PHD_FILE: MSMg01no491_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:05 2005
(362 letters)
>mm_chr4_151393939_151394701
Length = 763
Score = 658 bits (340), Expect = 0.0
Identities = 358/364 (98%), Gaps = 3/364 (0%)
Strand = Plus / Minus
Query: 1 gagtggagcttctgtgacagcgtggggacagggcaccctgcacctgggcagtggtgacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagtggagcttctgtgacagcgtggggacagggcaccctgcacctgggcagtggtgacct 504
Query: 61 cagtgcgctgctgtagggcctgctcctaacg-ccgtggtccctttcctctgcagctgtgg 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 cagtgcgctgctgtagggcctgctcctaacgcccgtggtccctttcctctgcagctgtgg 444
Query: 120 aacagttacgagtgcacgtcaggcgacacaaaggtgtgagaaagttcgagtgcaccgagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacagttacgagtgcacgtcaggcgacacaaaggtgtgagaaagttcgagtgcaccgagt 384
Query: 180 gtggctacaagttcacgcggcaggtaggccaggccgggtcccttgctcccctgctccctt 239
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 383 gtggctacaagttcacgcggcaggtaggccgggccgggtcccctgctcccctgctccctt 324
Query: 240 ccgtccccgctctgagctct-gctcctccccaggctcacctgcggaggcacatggagatc 298
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 ccgtccccgctctgagct-tggcttctccccaggctcacctgcggaggcacatggagatc 265
Query: 299 cacgacagagtggagaactacaatccccggcagcgcaagctccggaacctcatcattgag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacgacagagtggagaactacaatccccggcagcgcaagctccggaacctcatcattgag 205
Query: 359 gatg 362
||||
Sbjct: 204 gatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space: 266162
Effective search space used: 266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
