BAC Information

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BAC

Clone NameMSMg01-492B15
Chromosome4 (Build37)
Map Location 19,847,941 - 19,848,246
singlet/doubletsinglet
Overlap geneAtp6v0d2
Upstream geneLOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13
Downstream geneLOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492B15.T7 (MSMg01no492_b15.b1)MSMg01-492B15.TJ (MSMg01no492_b15.g1)
ACCAG569939AG569940
length714722
length of high quality
(start - end)
319 (318 - 636)291 (322 - 612)
definitionCHROMAT_FILE: MSMg01no492_b15.b1 PHD_FILE: MSMg01no492_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:14 2005CHROMAT_FILE: MSMg01no492_b15.g1 PHD_FILE: MSMg01no492_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCAGAAATCCGCGGAATT
CTATTGTCTACCACAATGATACATAATTCCAAATACAGCATCCTCAGTTG
GGAGTTTGGTGACGAGGAAATGTTAATTACTTATAGAAATGCATGTATAA
ATTAAAGAAGGGGAAAACAGGAACCTTAACACATGGCAGAATACTTACTC
AGAGAGAAGTCAGCTGTTTGGATAAATGTTTTACAGTTTTGAGTGAAGCC
TCTACAAGCAATAAAAATGCTAATTTAAACCCAAGCAACCATTAAGATGT
CTTTGTGACATCTTTTCATGCTGCTCATACAAGGATTTAGAGAGAATCAA
AGAAGTTGCATCAAAGTCAATTCTAGGGCAGAAAATGCAAAGAGGCTACA
AATCAAGACTTCAGAGTTACCACCAGGACCAGCGAGGTGGCTCAGTGGTT
AAGAGTAAGTTCCGCTCTGACGGGGGACCTGAATTCAGTTCACAGCATCC
CACTGGACCCCTCACAGCCATCTAATATTGCCAGCTCCAGGGGCATCTGA
TGCCCCCAAAGCACCTGCACTCACATGCAGATAACCACCCCCTTACATAC
ATATACACACAATTTTAAATGGNTTTTGCCTTTTTTTTTTCTTTTCTTCT
TTCTTTTTAAGCAACAAGACTTTTCGCCATGGGGAATTTTAACCCAAAGA
TTCCCTTGATAGTA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAATTCTCACCTGAGGAATACCGAATGGCATAGA
AACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCATGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCATATTATTGGAGATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA
ACACATGATACTCAAGAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_b15.b1 MSMg01no492_b15.b1 CHROMAT_FILE:
MSMg01no492_b15.b1 PHD_FILE: MSMg01no492_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:14 2005
         (319 letters)



>mm_chr4_19847939_19848657
          Length = 719

 Score =  478 bits (247), Expect = e-139
 Identities = 293/312 (93%), Gaps = 7/312 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctgctcatacaaggatttagagagaatcaaagaagttgcatcaaagtcaattctagg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgctgctcatacaaggattcagagagaatcaaagaagttgcatcaaagtcaattctagg 249

                                                                       
Query: 61  gcagaaaatgcaaagaggctacaaatcaagacttcagagttaccaccaggaccagcgagg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcagaaaatgcaaagaggatacaaatcaagacttcagagttaccaccaggaccagcgagg 189

                                                                       
Query: 121 tggctcagtggttaagagtaagttccgctctgacgggggacctgaattcagttcacagca 180
           |||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||
Sbjct: 188 tggctcagtggttaagagtacgttccgctctgacagggaacctggattcagttcacagca 129

                                                                       
Query: 181 tccc-actggacccctcacagccatctaatattgccagctccaggggcatctgatgcccc 239
           |||| ||||||||||||||||||||||||||| |||||      || |||||||||||||
Sbjct: 128 tccccactggacccctcacagccatctaatatcgccag------ggccatctgatgcccc 75

                                                                       
Query: 240 caaagcacctgcactcacatgcagataaccacccccttacatacatatacacacaatttt 299
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 74  caaagcacctgcactcacatgcagataaccactcccttacatacatatacacataattta 15

                       
Query: 300 aaatggnttttg 311
           |||||| |||||
Sbjct: 14  aaatggtttttg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)