BAC Information

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BAC

Clone NameMSMg01-492E06
Chromosome4 (Build37)
Map Location 75,230,498 - 75,230,643
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492E06.T7 (MSMg01no492_e06.b1)MSMg01-492E06.TJ (MSMg01no492_e06.g1)
ACCAG570063AG570064
length715746
length of high quality
(start - end)
220 (72 - 291)146 (71 - 216)
definitionCHROMAT_FILE: MSMg01no492_e06.b1 PHD_FILE: MSMg01no492_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:26 2005CHROMAT_FILE: MSMg01no492_e06.g1 PHD_FILE: MSMg01no492_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTGAGTACCTTTAGATTGATATTCATATGGGAAATTAGTTTGAA
GTCCTCTATCTTTGTTGGATTTTTCTGTGATTTAGGTATCAGAGTATTTG
TGGCTTCATAGAATGACTTGGGTAGAGTACCTTCTAGTTCTATTTGGGGG
AATAGTTTGTGGAGAACTAGAATTAGATCTTATTTGAAGGTCTGATAGAA
CTCTGCACTAACCTATCTGGTCTAGGCTTTTTTTGGTTGGGAAACTATTA
ATGCCTGCTTCTATTTTTTTTTTTTTCTTTCGTTTTCTTTTTTTAAATAT
TTTATTATTAGGTATTTTCCTCGATTTACATTTCCAATACGATCCCAAAA
GTTCCCCATACCTTTCTGCCAATTCCCTACCCATCAACTCCCACTTTTTG
GCTCCGGTTTTACCCTGTACTGTGGCATATACCGTTTGTCTGTCTTATGG
GTCTCTCTTCTCAGCGATGGCCTACCAGGCCATCTTTTGATTTATATGCT
GTTATATCTCAGAGCTTCTTGGTTTTTCCTTTTTCTCATTGTTGCCCCTC
TTACTGTTTTGCACATCCCTTCACCTCCCTGTGTTTTTTCTTTTGTTCCT
CCCCCTGTTGTCCCTGATGATTCTTTCCTAATTTTGTTGTGTGCTATCTA
CCCTTTTTTGTCTGC
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTGTAATCAATAACTCCTGTGGTGGAGG
GTGCTGACAGATGTAGAGTTAATATCCCTTTCATATTTGTGCATTCTATG
TCAAAGCAATGACTCAGGCATGAAGCCTGAAGCTTAGAATTTCCTCTTTC
CTGACATTCTCTGAGAATCTCACACAAGACCATCAACTTTGTTGATTATA
GAAAATGTTCAATGCTCAGTCTTCATTTATCCGTGAGCTCTACAGGTTTA
ATCTTATTCAGCGCTCCTAGGAACCACCGGATGATCTCATTCGTGCTCTT
TCGCACGATCCCCATCTAAACTGCGATATGCGCTGTTGTTAATAAAAATA
TAAAGGACGAAACGGGTGCTTTCTCTTATAGAAGTCCGTATTTGCGTTTG
CTATTGCCTCTTTCGGAATGTTTGATAACGCTCATCGTTATGTCTGCTCT
ATATTTTTATCATTCACCGTGGTGTCTCTACTTGACCCGTTTCGCATCCC
CTCTTCATCGTCGAAACTCACCGCTGCTCTCCGCTTGTTTGAATGCATTT
CCTTTCATCGTTTACAGGTTAACTTATCTCTTCACTTTCGGTATATCGCC
GGATATTTATCCTTTTTCCGCCCCACATCATTTATCTCCGTTTCGTTTTG
CCTCTTATTTCCGAAAATTCACCTTTGCCACCTTTGCTCTTGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_e06.g1 MSMg01no492_e06.g1 CHROMAT_FILE:
MSMg01no492_e06.g1 PHD_FILE: MSMg01no492_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:26 2005
         (146 letters)



>mm_chr4_75230298_75230843
          Length = 546

 Score =  275 bits (142), Expect = 1e-78
 Identities = 145/146 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtaatcaataactcctgtggtggagggtgctgacagatgtagagttaatatccctt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 346 cagtgtaatcaataactcctgtggtggagggtgctgacagatgtggagttaatatccctt 287

                                                                       
Query: 61  tcatatttgtgcattctatgtcaaagcaatgactcaggcatgaagcctgaagcttagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcatatttgtgcattctatgtcaaagcaatgactcaggcatgaagcctgaagcttagaat 227

                                     
Query: 121 ttcctctttcctgacattctctgaga 146
           ||||||||||||||||||||||||||
Sbjct: 226 ttcctctttcctgacattctctgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)