Query= MSMg01no492_f15.b1 MSMg01no492_f15.b1 CHROMAT_FILE:
MSMg01no492_f15.b1 PHD_FILE: MSMg01no492_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:33 2005
(511 letters)
>mm_chr4_41180226_41181135
Length = 910
Score = 804 bits (416), Expect = 0.0
Identities = 431/438 (98%), Gaps = 6/438 (1%)
Strand = Plus / Minus
Query: 76 atgatataggagttctgagaatgctggtctgtgcatatgttatgctgtttcataagctga 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 atgatataggagttctgagaatgctggtctgtgcatatgttatgctgtttcataagctga 851
Query: 136 gggttgtgatgaacacctttcattctagat--tggaaggtagaagaggtaggccgatcaa 193
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 850 gggttgtgatgaacacctttcattctagattct---aggtagaagaggtaggccgatcaa 794
Query: 194 ttagtaatgagtttgagtttagcctggtctgtatagcaggttgttccaggccagtaacca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttagtaatgagtttgagtttagcctggtctgtatagcaggttgttccaggccagtaacca 734
Query: 254 ctacttaatttaagactttgcctagttttatttggggacacaagagacacaggaatctca 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctacttaatttaagactttgcctagttttatttggggacacaagagacacaggaatctca 674
Query: 314 acctgctctttgagcctaaacataatagagtctagaaaaggccattgggtggaaggacag 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acctgctctttgagcctaaacataatagagtctagaaaaggccattgggtggaaggacag 614
Query: 374 cataatttgctgtatttgaatagaagaatcacaaagttaatattgaatgccttttttccc 433
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 613 cataa-ttgctgtatttgaatagaagaatcacaaagttaatattgaatgcctttttcccc 555
Query: 434 cccttttaaccattttctgattcttttactagcttatggaagtgacgggaaaaaatcagg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cccttttaaccattttctgattcttttactagcttatggaagtgacgggaaaaaatcagg 495
Query: 494 atgaatgcatcgtggccc 511
||||||||||||||||||
Sbjct: 494 atgaatgcatcgtggccc 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space: 450900
Effective search space used: 450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_f15.g1 MSMg01no492_f15.g1 CHROMAT_FILE:
MSMg01no492_f15.g1 PHD_FILE: MSMg01no492_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:33 2005
(207 letters)
>mm_chr4_40985225_40985831
Length = 607
Score = 369 bits (191), Expect = e-107
Identities = 203/207 (98%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 1 ttcttgtctgaggtactaagggtggatcccaggccctcgttcacaaaagaaactgctctg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttgtctgaggtactaagggtggaacccaggccctcgttcacaaaagaaactgctctg 260
Query: 61 ccagtgaacacagccccaccagataaaagaaatcggaaggaacttgtatagactgctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtgaacacagccccaccagataaaagaaatcggaaggaacttgtatagactgctggc 320
Query: 121 gtgtttgagtccatcttgtgtagtttggggtagagagactttggtaagctaataagctga 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gtgtttgagtccatcttgtgtagtttggggtagagagactttggtaggctaataagctga 380
Query: 181 gaggggg-agggagggaggaagggagg 206
||||||| ||||||||||| |||||||
Sbjct: 381 gaggggggagggagggagggagggagg 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
