TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACTTCCTTGAGACCATCGGGAGGGGAACAACCATCAGCCCTTGTCATC
CTGCCATTTATATCCTGGTTGCCAGATGTGAAGCGAGACTGACAGTTCTT
TCCACTAGGTAGAGAATCAAGCATGAGGAGGAGCTGGACTGGCAAACTGT
TGAGTTCTGGGCACAGCACAAGCCCATAGCAAAAGGCCATGGATAGTATT
GACTCCTGTCACTCAGTTCATTCCTAGATCACTTTTGTTAAGGCTTTGCT
GGGGACTGAGAGGTAAACTAGAGTGGTCCACGTGGAAGCCCACGAAAAGA
TGCAGCAAGTGCATAGGAAGAGGGTGGCTCCACGGAAGGACAGTGAGGTG
CTGGAGCATAGAAGGTGCTTCCATGGGAAACGCCATGAGAACAGTGGAGG
CAGCGGGATGCGGCGGGCGGGCAGAGCCCTCTTCCTGTCTCATGGCTGAT
CCTGGACTGAGCGAGCTGTTCCCTTGCTCTCTAGGAATCTCTCGTGAGAA
GTGAGAGAGTCTGAGAGGGACAGGTGGGGGGATGACTGGGAGGCTGAAGA
GGTTACCACTGGGCAGGTCTACTTGCCAGTTTAAGACCAGAGAAATAAAC
TGTAGCCCTAAACCCCAGATCCTAGACCCTTACTAACCAACCTCTCTAGA
ATAGAAAGGGGGAGGGAAGATGGAGGGN

TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGACCCATATTCATCCTGGAAATCCACAA
CATATGGTTGGTTTTATGCCCAAGGGCAGTATTCAAAACTTCTTGCTGAA
TGAACAACATAATAGGTAGTTCAATTACTCACTGGCAAAGGAAAAGACCA
GTTAGGAGGAATGGCCAACAATGATGAGACCAGGAAGGATCATTATATAT
AGAAAAAAAGAGTAGTGGGCAGACAACAGCCCAGAAGAAAGCTATCTTCC
TAAATGGCTTATGTTTTAAAGTTTACTTAGCAGGCCTGAGATAAACAACC
CAGCATGTTCACAAGAACAGCATATCTTCAGAACTGTCCTCGACTGGATG
TTAGTGCTGAGCCTCTGGGATATGCTCTCTGATAAGAATGTTTCTGTATG
TGTAAGGCCTTGGGTCACACAGTACCAATTTGACCAGATAGTTTGTACTA
ACAATGTGAGTCACAGAAAAGATCTATTTTTGTTTGTTGGAATGAAGGCA
GTTAAGACCTTACTTAACTCAGCTGTTATGCAGACTATAAACCTATGGAT
TGTGATAGCTAATCTACATCTATATCAACTTTTATTAGGTTAAGAACTAC
CTAAGAGATTTGCAAAGCACTCCTCTGAAAGCATTTCTAGGGAGGTTTTG
GGTGGAGGTGGGGGTACCCGGCTTGN

Query= MSMg01no492_n19.b1 MSMg01no492_n19.b1 CHROMAT_FILE:
MSMg01no492_n19.b1 PHD_FILE: MSMg01no492_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:12 2005
         (658 letters)



>mm_chr4_47245058_47246115
          Length = 1058

 Score = 1226 bits (634), Expect = 0.0
 Identities = 652/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggaggggaacaaccatcagcccttgtcatcctgccatttatatcctggttgccagat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcgggaggggaacaaccatcagcccttgtcaccctgccatttatatcctggttgccagat 260

                                                                       
Query: 61  gtgaagcgagactgacagttctttccactaggtagagaatcaagcatgaggaggagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaagcgagactgacagttctttccactaggtagagaatcaagcatgaggaggagctgg 320

                                                                       
Query: 121 actggcaaactgttgagttctgggcacagcacaagcccatagcaaaaggccatggatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggcaaactgttgagttctgggcacagcacaagcccatagcaaaaggccatggatagt 380

                                                                       
Query: 181 attgactcctgtcactcagttcattcctagatcacttttgttaaggctttgctggggact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 attgactcctgtcactcagttcattcccagatcacttttgttaaggctttgctggggact 440

                                                                       
Query: 241 gagaggtaaactagagtggtccacgtggaagcccacgaaaagatgcagcaagtgcatagg 300
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaggtaagctagagtggtccacctggaagcccacgaaaagatgcagcaagtgcatagg 500

                                                                       
Query: 301 aagagggtggctccacggaaggacagtgaggtgctggagcatagaaggtgcttccatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagggtggctccacggaaggacagtgaggtgctggagcatagaaggtgcttccatggg 560

                                                                       
Query: 361 aaacgccatgagaacagtggaggcagcgggatgcggcgggcgggcagagccctcttcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacgccatgagaacagtggaggcagcgggatgcggcgggcgggcagagccctcttcctg 620

                                                                       
Query: 421 tctcatggctgatcctggactgagcgagctgttcccttgctctctaggaatctctcgtga 480
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcatgtctgatcctggactgagtgagctgttcccttgctctctaggaatctctcgtga 680

                                                                       
Query: 481 gaagtgagagagtctgagagggacaggtggggggatgactgggaggctgaagaggttacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagtgagagagtctgagagggacaggtggggggatgactgggaggctgaagaggttacc 740

                                                                       
Query: 541 actgggcaggtctacttgccagtttaagaccagagaaataaactgtagccctaaacccca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgggcaggtctacttgccagtttaagaccagagaaataaactgtagccctaaacccca 800

                                                                     
Query: 601 gatcctagacccttactaaccaacctctctagaatagaaagggggagggaagatggag 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatcctagacccttactaaccaacctctctagaatagaaagggggagggaagatggag 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no492_n19.g1 MSMg01no492_n19.g1 CHROMAT_FILE:
MSMg01no492_n19.g1 PHD_FILE: MSMg01no492_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:12 2005
         (204 letters)



>mm_chr4_47395457_47396060
          Length = 604

 Score =  395 bits (204), Expect = e-114
 Identities = 204/204 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacccatattcatcctggaaatccacaacatatggttggttttatgcccaagggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agagacccatattcatcctggaaatccacaacatatggttggttttatgcccaagggcag 345

                                                                       
Query: 61  tattcaaaacttcttgctgaatgaacaacataataggtagttcaattactcactggcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tattcaaaacttcttgctgaatgaacaacataataggtagttcaattactcactggcaaa 285

                                                                       
Query: 121 ggaaaagaccagttaggaggaatggccaacaatgatgagaccaggaaggatcattatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggaaaagaccagttaggaggaatggccaacaatgatgagaccaggaaggatcattatata 225

                                   
Query: 181 tagaaaaaaagagtagtgggcaga 204
           ||||||||||||||||||||||||
Sbjct: 224 tagaaaaaaagagtagtgggcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)