Query= MSMg01no493_f12.b1 MSMg01no493_f12.b1 CHROMAT_FILE:
MSMg01no493_f12.b1 PHD_FILE: MSMg01no493_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:50 2005
(622 letters)
>mm_chr4_30409672_30410693
Length = 1022
Score = 1149 bits (594), Expect = 0.0
Identities = 615/622 (98%)
Strand = Plus / Minus
Query: 1 ttctacttggtgtaacatttttgcaaatagtattaaatactcttttccaaaagaaattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttctacttggtgtaacatttttgcaaatagtattaaatactcttttccaaaagaaattcc 763
Query: 61 cttcaagcaccataaatgctaaagcagtccttttctctgggtatggattctactactcct 120
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cttcaagcatcataaatgttaaagcagtccttttctctgggtatggattctactactcct 703
Query: 121 gcatctattataatactgattatctaacatggaagttttgagttaataggttaaatattt 180
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 702 gcatctattataatactgattatttaacatggaagttttgagttaatgggttaaatattt 643
Query: 181 tatgaccctgtatattgtatgaaaggtatctatctgtgcttctactctatgtagtatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatgaccctgtatattgtatgaaaggtatctatctgtgcttctactctatgtagtatatt 583
Query: 241 attaggtatgcaacaggcagttggacaatacttaaaactcacattctacaattaaatgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 attaggtatgcaacaggcagttggacaatacttaaaactcacattctacaattaaatgag 523
Query: 301 tacaaataattaaatatagtagctctatttttcatagcatccaaataatttatacatttc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tactaataattaaatatagtagctctatttttcatagcatccaaataatttatacatttc 463
Query: 361 attgatttagaatcattgatagcacacctatgaagaggaatgctgaggtgtgtttacata 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 attgatttagaatcattgatagcacacctatgaagagggatgctgaggtgtgtttacata 403
Query: 421 tagtgtctaatttgtccattttccttaaagtaggaaaatactatattaaggtatgataga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagtgtctaatttgtccattttccttaaagtaggaaaatactatattaaggtatgataga 343
Query: 481 atgagcattacaacaacaacacaaatctttgttcttgcatctttttgtttgtaccacaga 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgagcattgcaacaacaacacaaatctttgttcttgcatctttttgtttgtaccacaga 283
Query: 541 agggcacagacctaatatgctgttaggtgattactgtggaggtaagatattaaataaata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agggcacagacctaatatgctgttaggtgattactgtggaggtaagatattaaataaata 223
Query: 601 tatagcctaacgtgacatggaa 622
||||||||||||||||||||||
Sbjct: 222 tatagcctaacgtgacatggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_f12.g1 MSMg01no493_f12.g1 CHROMAT_FILE:
MSMg01no493_f12.g1 PHD_FILE: MSMg01no493_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:50 2005
(559 letters)
>mm_chr4_30237488_30238444
Length = 957
Score = 1029 bits (532), Expect = 0.0
Identities = 550/556 (98%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 1 atacagttccttgtcaaaaagaaagcctcaactttaaactttttaaaaaatactcgtaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacagttccttgtcaaaaagaaagcctcaactttaaactttttaaaaaatactcgtaca 260
Query: 61 gttttagcgttatcaaatatcatttaattatctttttgagctaatatgcattgatggatt 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gttttagcgttattaaatatcatttaattatctttttgagctaatatgcattgatgtatt 320
Query: 121 ttgcagcagcatttaacttactttagtgatcctaaaaacatcattgaacttgcttctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagcagcatttaacttactttagtgatcctaaaaacatcattgaacttgcttctaaa 380
Query: 181 tcagcttattgataaaaaataaactttatgctttcaaaaactgtatgacaaactaaagta 240
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tcagcttattgat-aaaaataaactttatgctttcaaaaattgtatgacaaactaaagta 439
Query: 241 atttaaaatctaaaagttttataacaatttcagtaaatttacatagtgtagaaccaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttaaaatctaaaagttttataacaatttcagtaaatttacatagtgtagaaccaatat 499
Query: 301 tttagtaaaaggtataccatactattcaattaatagattaagtatacttttacttttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttagtaaaaggtataccatactattcaattaatagattaagtatacttttacttttatc 559
Query: 361 ttgaaatttttatttaatatcatgtaaatataacatcagatattggtgtttattgactaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 ttgaaatttttatttaatatcatgtaaatataacatcagatattggtgttt-ttgactaa 618
Query: 421 gtacagtccacaagacagagaaataaaaggttttatatgtgtaatgttttgtttaaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtacagtccacaagacagagaaataaaaggttttatatgtgtaatgttttgtttaaaaac 678
Query: 481 atacagtttcagtgtacattaaagactttcaatagattttccaatttactataaatcact 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 atacagtttcagtgtacattaaagactttcaatagattctccaatttactataaatcact 738
Query: 541 attccttcatagttat 556
||||||||||||||||
Sbjct: 739 attccttcatagttat 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 957
Length adjustment: 10
Effective length of query: 549
Effective length of database: 947
Effective search space: 519903
Effective search space used: 519903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
