Query= MSMg01no493_n16.b1 MSMg01no493_n16.b1 CHROMAT_FILE:
MSMg01no493_n16.b1 PHD_FILE: MSMg01no493_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:33 2005
(653 letters)
>mm_chr4_71609593_71610645
Length = 1053
Score = 1228 bits (635), Expect = 0.0
Identities = 643/649 (99%), Gaps = 6/649 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcactggtactatcgcctacatcttcaggattccaacatagactaaagacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattccttcactggtactatcgcctacatcttcaggattccaacatagactaaagacca 270
Query: 65 gttgagggcatccagcctcgcagactgaaaaactaccagattttggcatttaggttagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gttgagggcatccagcctcgcagactgaaaaactaccagattttggcatttaggttagga 330
Query: 125 gacagctattttactaggcagtatactctactaaatcccccatttatgtagattagagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gacagctattttactaggcagtatactctactaaatcccccatttatgtagattagagag 390
Query: 185 agagagagagagagagagagagagagagagagagagagagagacttatgctattatatct 244
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 391 agagagagagagagagagagagagagagagagagaga------cttatgctattatatct 444
Query: 245 gttccttttaagaactccacctaatgctggctgaggtagcaggagtggtgctactgcaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttccttttaagaactccacctaatgctggctgaggtagcaggagtggtgctactgcaag 504
Query: 305 ccagtaagcatcttttctccatagatctacatctgcttctacttctccaggttctggccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagtaagcatcttttctccatagatctacatctgcttctacttctccaggttctggccc 564
Query: 365 tgctggaatttctactcctagttccttagatggtgaactgtgatatgggagtacaaaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctggaatttctactcctagttccttagatggtgaactgtgatatgggagtacaaaaat 624
Query: 425 aaatctttttttccagaagttacttttactcatagtgttttaatatagcaatagaaaccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatctttttttccagaagttacttttactcatagtgttttaatatagcaatagaaaccc 684
Query: 485 taactaagacatatgtgttgttattgttacttgcagagttaagtagttaggtaaccccag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taactaagacatatgtgttgttattgttacttgcagagttaagtagttaggtaaccccag 744
Query: 545 ttcaggaagatgaatactacatgttctgtttcatatatgcatcataactcctaattcgtg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcaggaagatgaatactacatgttctgtttcatatatgcatcataactcctaattcgtg 804
Query: 605 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 653
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_n16.g1 MSMg01no493_n16.g1 CHROMAT_FILE:
MSMg01no493_n16.g1 PHD_FILE: MSMg01no493_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:33 2005
(658 letters)
>mm_chr4_71784223_71785281
Length = 1059
Score = 652 bits (337), Expect = 0.0
Identities = 436/515 (84%), Gaps = 71/515 (13%)
Strand = Plus / Minus
Query: 1 tggctatgtgggagaaggggactggtagggacaggaactaacgtaggggtcgtgtttggg 60
|||| ||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct: 515 tggccatgcgggagaaggggactggtagggacaggaactaatgtaggggttgtgcttggg 456
Query: 61 agagaaaggtttctggctcatatcttggctaagaattcagggcagcgatggtaa-ttttt 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 455 agggaaaggtttctggctcatatcttggctaagaattcagggcagcgatggtaatttttt 396
Query: 120 ttttccctttcactttcaaattctaagcttggtgctctgtggtaataggggatgggggac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttttccctttcactttcaaattctaagcttggtgctctgtggtaataggggatgggggac 336
Query: 180 cttcttgacattgaagtttctaaacagttctatactgggtctttcctggttctgaaggtg 239
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 335 cttcttgacattgacgtttctaaacagttctattctgggtctttcctggttctgaaggtg 276
Query: 240 ggtccttacctctctgatctgccctggcgaaagcgtgctcagcatgtagagtcaagtttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggtccttacctctctgatctgccctggcgaaagcgtgctcagcatgtagagtcaagtttc 216
Query: 300 tgagagtcactgcatcacacacacacaca------------------------------- 328
|||||||||||||||||||||||||||||
Sbjct: 215 tgagagtcactgcatcacacacacacacatacacacacacacacatctgctcagcatgta 156
Query: 329 ---------------------------------------cacacacacacacacacacac 349
|||||||||||||||||||||
Sbjct: 155 gagtcaagtttctgagagtcactgcatcacacacacacacacacacacacacacacacac 96
Query: 350 acacacacacacaccatctgccaaccccagaccccactgtgctcatgttctctccactga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 acacacacacacaccatctgccaaccccagaccccactgtgctcatgttctctccactga 36
Query: 410 actgactttgttgcctcatgcccttccaggggtca 444
|||||||||||||||||||||||||||||||||||
Sbjct: 35 actgactttgttgcctcatgcccttccaggggtca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
