Query= MSMg01no493_p05.b1 MSMg01no493_p05.b1 CHROMAT_FILE:
MSMg01no493_p05.b1 PHD_FILE: MSMg01no493_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
(706 letters)
>mm_chr4_26739654_26740759
Length = 1106
Score = 1294 bits (669), Expect = 0.0
Identities = 685/691 (99%), Gaps = 2/691 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtacttttcgtagttttatttgttatttgacctgtttcatttttgaaaacga 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 689 ggaattctgtactttttgtagttttatttgttatttgacctgtttcattttttaaaacga 630
Query: 64 aagagggggaaagagtataaaattggaattaaatttatagaaggcggaaaggatttggga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagagggggaaagagtataaaattggaattaaatttatagaaggcggaaaggatttggga 570
Query: 124 agagacaggtgagactaaaccatgattagaatacattgtatgaaaaaagattatttccaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agagacaggtgagactaaaccatgattagaatacattgtatgaaaaaagattatttccaa 510
Query: 184 ctaaagtaaaggatatttgctctttataattgctgctaattgcctatctcccccttcaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctaaagtaaaggatatttgctctttataattgctgctaattgcctatctcccccttcaat 450
Query: 244 attatgtgggacaactcattgtagagaattattccattaagttcttcttgtgaatatgtt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttatgtgggacaactcattgtagagaattattccattaagttcttcttgtgaatatgtt 390
Query: 304 agaagtggaggttggggagcagggcaaggatagtctataggggattttcagagaggaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agaagtggaggttggggagcagggcaaggatagtctataggggattttcagagaggaaac 330
Query: 364 tgggaaaggacatagcatttgaaatgtaaatgaagaaaatatctaataaaaatagaatta 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgggaaaggagatagcatttgaaatgtaaatgaagaaaatatctaataaaaatagaatta 270
Query: 424 taataaaaaataaagatacagacagaaaaaaaaagaaatagattgtattgacactctaag 483
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 taataaaaaataaagatacagacag--aaaaaaagaaatagattgtattgacactctaag 212
Query: 484 aaattatttaaaaatatatgcattgttggtgggattgcaagttggtacaaccactctgga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aaattatttaaaaatatatgcattgttggtgggattgcaagttggtacaaccactctgga 152
Query: 544 aatcagtttagcacttcctcagaaaaatgaacattgtataacctgaggatccatctatac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aatcagtttagcacttcctcagaaaaatgaacattgtataacctgaggatccatctatac 92
Query: 604 cactcctgggcatatatacccaagagattccccaacatataacaaggacacatgctccac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 cactcctgggcatatatacccaagagattccccaacatataacaaggacacatgctccac 32
Query: 664 tatgttcatagtagtcttatttataatatct 694
|||||||||||||||||||||||||||||||
Sbjct: 31 tatgttcatagtagtcttatttataatatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no493_p05.g1 MSMg01no493_p05.g1 CHROMAT_FILE:
MSMg01no493_p05.g1 PHD_FILE: MSMg01no493_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
(677 letters)
>mm_chr4_26597429_26598506
Length = 1078
Score = 1218 bits (630), Expect = 0.0
Identities = 666/680 (97%), Gaps = 5/680 (0%)
Strand = Plus / Plus
Query: 1 atgtatcagtcgccaaatatcatccttgatgtttacaatatgcaatgattaatgcgaaga 60
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atgtatcagtcgccaaatatcattcttgatgtttacaatatgcgatgattaatgcgaaga 260
Query: 61 aaaagtgagatttaaaattaagaatgtctttgtacctgctataactatttgaaaattttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtgagatttaaaattaagaatgtctttgtacctgctataactatttgaaaattt-- 318
Query: 121 aaaaaa---tctcattagaattaatcagatcacattttaagttatgtttcatacgaggaa 177
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 319 aaaaaaaaatctcattagaattaatcagatcacattttaagttatgtttcatatgaagaa 378
Query: 178 tatttatatgagaaatttatcttttatttagaacttgcaagtttaagaattccctttaca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatttatatgagaaatttatcttttatttagaacttgcaagtttaagaattccctttaca 438
Query: 238 gctttgatttttatatgtaagattcatttatgcataacatttacattcattattcactaa 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 gctttgatttttatatgtaagattcatttatgcatcacatttacattcattattcactaa 498
Query: 298 aaatttcaggtttgtaaatgcatttataataattgaatttgcttttatagtgccttatgc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaatttcaggtttgtaaatgcatttataataattgaatttgcttttatagtgccttatgc 558
Query: 358 aaactgtagattatctcagaagcattatctcttctggtcacagtgggagacataggctcg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 559 aaactgtagattatctcagaagcattatctcttctggtcacagtgggagacataggcttg 618
Query: 418 gatgtgtaggtactctggaatcaatgccaccttatgtgctaatggtcattctttactata 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 gatgtgtaggtactctggaatcaatgccaccttatgtgctaatggccattctttactata 678
Query: 478 gttggcatgatgcttgttatggttaacttgaagtcatcaataatgtgtgcaatacaattt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gttggcatgatgcttgttatggttaacttgaagtcatcaataatgtgtgcaatacaattt 738
Query: 538 aaattgatgtttttaatatcagctgaaaatttaactttcttaatataaaagccctttgtt 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 739 aaattgatgtttttaatatcagctgaaaatttaactttcttaatataaaatccctttgtt 798
Query: 598 tattttcttgaagtaattagggcaaattggttcattcagaggtcagtacaaacagtctga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tattttcttgaagtaattagggcaaattggttcattcagaggtcagtacaaacagtctga 858
Query: 658 atccaaagctgacctgttat 677
||||||||||||||||||||
Sbjct: 859 atccaaagctgacctgttat 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space: 712356
Effective search space used: 712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
