BAC Information

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BAC

Clone NameMSMg01-494K11
Chromosome4 (Build37)
Map Location 21,425,639 - 21,425,982
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494K11.T7 (MSMg01no494_k11.b1)MSMg01-494K11.TJ (MSMg01no494_k11.g1)
ACCAG571882AG571883
length728728
length of high quality
(start - end)
436 (58 - 493)412 (63 - 474)
definitionCHROMAT_FILE: MSMg01no494_k11.b1 PHD_FILE: MSMg01no494_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:32 2005CHROMAT_FILE: MSMg01no494_k11.g1 PHD_FILE: MSMg01no494_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCTGTCGCTAAACGACTCATATTCGAAAGAGGATCCGCGGAATTCTTTGT
TCTCTTCTGAGCCCCATTTTTTAATGGGGTTGTTCGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
ATAAAGTCTACTTTCTAAGGCTATTTTGTGAGAACTATTTACGTTTAATG
CTAACAGAAAACCAGATTTTCTGAGGTTAATTAAGCAACATCTGACATTT
AAAATTGTTCTCTTGATGAAATAAACACTCTACACTCCTTGGATCATGGA
AGTCCTTGAAATCATTTTTATACACATTCATCATCAGATTTTCATCAACG
ATGAGCTTCTCTAACAGTGAAATTAACTTGTCTATTTGAATAAATCTTTA
CCGTACAGTTTGAGAAAATATCTACTGCATTACATAATGATGTTTTTACC
TATTTTCATTGATCCCTGCATACCTATCCCCTTGGAATGGGGATAGAGTG
AGAGGAGAGGCAGCAGCTAATGGTTTGCTAATGAGGTAGGCTTAACACTG
GAGGATCTGACTTGGATGGATAGATAGAAAAATGTAGATCTGCAGTTAGC
CTACTAACTTTCCTGGTCAGAACGTCCTATGCTATCTTAGGGAGTAGCTG
CTTGAATAGGAACCTTGAGACTAACCATATGTGGTGGAAATAAGGGATTT
TAACACAGTCGAATTTTATGGTGATCCC
GGGATGCCTGGNGGCCGCCGGTCAAAAACGGGGAGGNGAACTATAGATGA
CCCACGGAGATCCATTTATTAATTGTTGACCTTAGTGCCTGGGCTATTGG
TTCAGGAAGTTTTCTCCTGTGCCAATGCACCCATGACTATTCCCCACTCT
CTCTTTTATCAGGTTTAGTGTATTTTGTTTTAGGTTGAGGTCTTTGATCC
AATTGGATTTAATTTTGTGCAGAGTGATATGGATCTATTTGCATTCTTCT
ACAGGCAGACATTCATCCAGTTAGAACAGAACCATTTGTTGCAGATGCTT
CTTTTTTTCTATTGTATAGTTTTGGCTTCTTTGCCAAAAATCAAGTGCCC
ATACATTTGTAGATTTATCTCGGTCTTTGATTTGGTTCAACCTGTCTGAG
TTTAATGCCAATAACATGTGGTCTTTATTACCATTGCTCTGTAGTACAGC
TCAGAAATCAGGATGGTGATACCTCCAGGAGTTCTTTTATTGTATAGGAT
TGTTTTAGCTATCCTGTTTTCTATGTTTTTCTATAGGAAATTGAGTATTG
TTCTTTCAAGGTCTGTAAAGAATTGTTCTATAATTTTGATAGGAATTACA
TTGAATCTGTAGATTGTTTTTGGCAAGATGTCTTTTTCTTAATGATATTC
ACTCTGATTTGTGCCGAATCTGGAATTCCACTGCAGGTTTTGATTCACAT
TTTCCCCAAACGAACAACGATGCTCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_k11.b1 MSMg01no494_k11.b1 CHROMAT_FILE:
MSMg01no494_k11.b1 PHD_FILE: MSMg01no494_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:32 2005
         (436 letters)



>mm_chr4_21425314_21426151
          Length = 838

 Score =  623 bits (322), Expect = 0.0
 Identities = 338/344 (98%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 95  taaagtctactttctaaggctattttgtgagaactatttacgtttaatgctaacagaaaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taaagtctactttctaaggctattttgtgagaactatttacgtttaatgctaacagaaaa 610

                                                                       
Query: 155 ccagattttctgaggttaattaagcaacatctgacatttaaaattgttctcttgatgaaa 214
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccggattttctgaggttagttaagcaacatctgacatttaaaattgttctcttgatgaaa 550

                                                                       
Query: 215 taaacactctacactccttggatcatggaagtccttgaaatcatttttatacacattcat 274
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taaacactctatactccttggatcatggaagtccttgaaatcatttttatacacattcat 490

                                                                       
Query: 275 catcagattttcatcaacgatgagcttctctaacagtgaaattaactt--gtctatttga 332
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 489 catcagattttcatcaacgatgagcttctctaacagtgaaattaacttaagtctatttga 430

                                                                       
Query: 333 ataaatctttaccgtacagtttgagaaaatatctactgcattacataatgatgtttttac 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataaatctttaccgtacagtttgagaaaatatctactgcattacataatgatgtttttac 370

                                                       
Query: 393 ctattttcattgatccctgcatacctatccccttggaatgggga 436
           ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 ctattttcattgagccctgcatacctatccccttggaatgggga 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space:   353983
Effective search space used:   353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)