Query= MSMg01no495_k12.b1 MSMg01no495_k12.b1 CHROMAT_FILE:
MSMg01no495_k12.b1 PHD_FILE: MSMg01no495_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
(615 letters)
>mm_chr4_25563769_25564783
Length = 1015
Score = 1129 bits (584), Expect = 0.0
Identities = 605/612 (98%)
Strand = Plus / Plus
Query: 4 ctatagtctttgggaattaagatctaaagggggcattccttagttttaaatagttcccca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctatagtctttgggaattaagatctaaagggggcattccttagttttaaatagttcccca 263
Query: 64 ccaaaaataaaaataaaatcaaggacaatttttcagtctggttccaggaaggaggacacc 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaaaaataaaaataaaatcaagaacaatttttcagtctggttccaggaaggaggacacc 323
Query: 124 actcaaacttcctttgggcaggcaagatgatgtctggcaactcagtggcaaatagcagta 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 actcaaacttcctttgggcaggcaagatgatgtatggcaactcagtggcaaatagcagta 383
Query: 184 ttaaacctaccatccagaaatgttatctagtcagatacccttttaaaccaaatgaatatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaaacctaccatccagaaatgttatctagtcagatacccttttaaaccaaatgaatatt 443
Query: 244 ttattttttgataataagaaaaatgcatatatgtgaaatcatttgcactgaattttagag 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttagaatttgataataagaaaaatgcatatatgtgaaatcatttgcactgaattttagag 503
Query: 304 acctttggtgggggtttagagttccacataatttctctaggatattaaaaataaggaggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acctttggtgggggtttagagttccacataatttctctaggatattaaaaataaggaggc 563
Query: 364 atacaacagaaagtgcccctgggtcggcccttgctcccaggtcactttgcctgagttctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atacaacagaaagtgcccctgggtcggcccttgctcccaggtcactttgcctgagttctg 623
Query: 424 gcttctatttcctcaaccccattactctagatgctctagattacccttgtgtttgtttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttctatttcctcaaccccattactctagatgctctagattacccttgtgtttgtttaa 683
Query: 484 tttttttaccacatggttcccaataaaagcatgacggtggagaaaaactcaagtatagat 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 tttttttaccacatggttcccaataaaagcatgacggtggagaaaaactcaagtgtagat 743
Query: 544 acattgttatcatggtagcaatcacgctgctgtatttggagatctataaatcttttgcta 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 744 acattgttatcatggtagcaatcaggctgctgtatttggagatctataaatcttttgcta 803
Query: 604 ccaagggaaaca 615
||||||||||||
Sbjct: 804 ccaagggaaaca 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_k12.g1 MSMg01no495_k12.g1 CHROMAT_FILE:
MSMg01no495_k12.g1 PHD_FILE: MSMg01no495_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
(583 letters)
>mm_chr4_25707510_25708493
Length = 984
Score = 745 bits (385), Expect = 0.0
Identities = 415/427 (97%), Gaps = 8/427 (1%)
Strand = Plus / Minus
Query: 1 aaactgatgttcaggaactatgctttaagtagcaaggatctgataaactat-aagcaaaa 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 aaactgatgttcaggaactatgctttaagtagcaaggatctgataaactataaagcaaaa 365
Query: 60 tcatctagttcagtggtccttaagcaagactttgagtctctagagcatttaaccagagga 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 tcatctagttcagtggtccttaagcaagactttgagtctctagagaatttaaccagagga 305
Query: 120 tttattattcaacaattcataagacactcatatgtacataaatatgagtatttttctgga 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 304 tttattattcaacaattcataagacactcatatgtacagaaatatgagtatttttctgga 245
Query: 180 gtagaacttttaatttttagattctttgagaagcttatggctaattgttttt---aattt 236
||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 244 atagaaattttaatttttagattctttgagaagcttatggctaattgtttttaaaaa--t 187
Query: 237 ttctttatttcatatatgtgagtacaccatctctgtcttcagacataccagaatagggca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttctttatttcatatatgtgagtacaccatctctgtcttcagacataccagaatagggca 127
Query: 297 ttggataccattactgatggttgtgagccaccatgtggttactgggaattgaacttatga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttggataccattactgatggttgtgagccaccatgtggttactgggaattgaacttatga 67
Query: 357 cctctggaaga-acagtcagggctcttaactgctgagccatctctccagcccccttgtga 415
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cctctggaagaga-agtcagggctcttaactgctgagccatctctccagcccccttgtga 8
Query: 416 cctaatt 422
|||||||
Sbjct: 7 cctaatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
