BAC Information

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BAC

Clone NameMSMg01-496B21
Chromosome4 (Build37)
Map Location 8,191,375 - 8,191,783
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B21.T7 (MSMg01no496_b21.b1)MSMg01-496B21.TJ (MSMg01no496_b21.g1)
ACCAG573000AG573001
length754761
length of high quality
(start - end)
634 (83 - 716)411 (329 - 739)
definitionCHROMAT_FILE: MSMg01no496_b21.b1 PHD_FILE: MSMg01no496_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:21 2005CHROMAT_FILE: MSMg01no496_b21.g1 PHD_FILE: MSMg01no496_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAGGTCCTACATGTCAGTAAACGACTCACTTATCGNTAGAGAGGGCGG
AATTCTTTGTTTTGCTCAAAAACGGGTTTNTNAATGGGGTTATTTGAATT
TCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGGTATTAGTCCCC
TATCAGATTTAGAATTGGTAAAAATCCTTTCCGAATCTGTTGGTGGCGTT
TGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGA
TGTTTCATTTGTCAATTCTTGATCTTATAGCACAAGCCATTGCTGTTCTG
TTTAGGAATTTTTCCCCTGGGCTANATCTCCCCCACTTTCTCCTCTATTA
ATTTCAGTGTCTCTGGTCTTATGTGGAGATCTTTGATCCACTTAGACTTG
AGCTTTGTACAAGGAGATGAAAATGGATCAATTTGCATTCTTCTACATGA
TAACTGCCAGTTGTGCCAGCACCATTTGTTGAAATGCTGTCTTTTTTCCA
CTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTG
GGTTCATTTCTGGGTCTTCAATTCTATCCCATTGATCTACCTGTCTGGCA
TCGTACCAGTACCATGCAGTTTTTATCACAGTTGCTCTGTTGTATAGCTT
AACGTCTGACATGGCGATTCTACCAGAGGCTCTTTTATTGTTGAGAATAG
TTTTTGCTATCCTAGGNTTTTAATTTTTCCAGATGAATTAGCAAATTGCC
CTTT
ACATGATAGTGGGTGGCCTGGNGGCCGCCTGGTTCACAAAATGGGGGTNG
AACTATAGAAGGTGCTACAAAATTCCTTTAAATGAATTAGTGTTGATTTT
AGGCCACAGAAAAGAGTGAGAACAAAGATCCTAATTTTATAAAGCTCTTC
TGAGTGACATCAACATATAATGAATCTACAGGTCACTGAACACAGAAAAC
CTTCCATAAAGTGTCCCAGTTTCTTCAGAGAAGTCACAAAATTCAAAAGA
TTTATGAAGAAATACTAAGCCTAAAAAATAGATACAAAGGCAGGGGAAAG
TTTAAGGCACAATCTATGATTCTCTTATCTTGAGCCCCAGATATTGCTGC
ACTTATTTACACAATCCTCACAACTTTCTGAAAGGATGTCTTTCTTTTTA
AGCATGAAGAAATGGAGAAGAGAAGAATGGATGTGTGTAGAGGAATTTTA
ATACAGCAACATGGCTGCTCTGGCAAGGGATCACATCAAAGACTTTTTAG
GTCTGAGTGATCTGCTGAGATGAAACACCTTTAATCCCTCCATCTGGCAT
GCAGACACAACCTTAATACACACTTTTAATTTCATACAATGAAGGTAAAG
TTAGTTTGTAGAAGGAAGCAGTCATGTTGAAAGTGACATCTAATTGAGGG
GTAGACAAAGTGATGAATCAGAGAAAGATTTGACAGAATGAATCAGAGAT
AGTATATCAAAGTCTTATAAGGACAAACAAGAAAGAGCGGTTCCATAAGA
GCAGAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b21.g1 MSMg01no496_b21.g1 CHROMAT_FILE:
MSMg01no496_b21.g1 PHD_FILE: MSMg01no496_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:21 2005
         (411 letters)



>mm_chr4_8191175_8191985
          Length = 811

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgagccccagatattgctgcacttatttacacaatcctcacaactttctgaaaggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgagccccagatattgctgcacttatttacacaatcctcacaactttctgaaaggatg 260

                                                                       
Query: 61  tctttctttttaagcatgaagaaatggagaagagaagaatggatgtgtgtagaggaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttctttttaagcatgaagaaatggagaagagaagaatggatgtgtgtagaggaattt 320

                                                                       
Query: 121 taatacagcaacatggctgctctggcaagggatcacatcaaagactttttaggtctgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatacagcaacatggctgctctggcaagggatcacatcaaagactttttaggtctgagt 380

                                                                       
Query: 181 gatctgctgagatgaaacacctttaatccctccatctggcatgcagacacaaccttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgctgagatgaaacacctttaatccctccatctggcatgcagacacaaccttaata 440

                                                                       
Query: 241 cacacttttaatttcatacaatgaaggtaaagttagtttgtagaaggaagcagtcatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacttttaatttcatacaatgaaggtaaagttagtttgtagaaggaagcagtcatgtt 500

                                                                       
Query: 301 gaaagtgacatctaattgaggggtagacaaagtgatgaatcagagaaagatttgacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagtgacatctaattgaggggtagacaaagtgatgaatcagagaaagatttgacagaa 560

                                                            
Query: 361 tgaatcagagatagtatatcaaagtcttataaggacaaacaagaaagag 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatcagagatagtatatcaaagtcttataaggacaaacaagaaagag 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)